miRNA display CGI


Results 161 - 180 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 121081 0.67 0.55775
Target:  5'- gCGcCGGCGGCCGCCaGCGccuccaGGCcgUGCgGGu -3'
miRNA:   3'- -GCaGCUGUCGGCGG-CGC------CCG--ACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 33352 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 66768 0.67 0.55775
Target:  5'- cCGggUGugGcCCGUCGCgcgcgaucauGGGCUGCUGGa -3'
miRNA:   3'- -GCa-GCugUcGGCGGCG----------CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 31674 0.67 0.55775
Target:  5'- uG-CGGCuGGCCGCgGCGcGGCggcgGCUGa -3'
miRNA:   3'- gCaGCUG-UCGGCGgCGC-CCGa---CGACc -5'
23573 3' -62.2 NC_005261.1 + 133787 0.67 0.55775
Target:  5'- uCGUgCGGCGcaucCCGCC-CGGGCUGCUc- -3'
miRNA:   3'- -GCA-GCUGUc---GGCGGcGCCCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 137869 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 136191 0.67 0.55775
Target:  5'- uG-CGGCuGGCCGCgGCGcGGCggcgGCUGa -3'
miRNA:   3'- gCaGCUG-UCGGCGgCGC-CCGa---CGACc -5'
23573 3' -62.2 NC_005261.1 + 15641 0.67 0.55775
Target:  5'- aCG-CGGCguacaaGGCCGCUGCGGcGgaGCUGc -3'
miRNA:   3'- -GCaGCUG------UCGGCGGCGCC-CgaCGACc -5'
23573 3' -62.2 NC_005261.1 + 20642 0.67 0.55775
Target:  5'- uCGUCGGCAGgaucgacaGCgGCGGGC-GCgGGg -3'
miRNA:   3'- -GCAGCUGUCgg------CGgCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 87716 0.67 0.55775
Target:  5'- --aCGACGGCCcuGCUGCGcuGGCUgggcgaggcGCUGGg -3'
miRNA:   3'- gcaGCUGUCGG--CGGCGC--CCGA---------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 198 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 123884 0.67 0.55775
Target:  5'- cCG-CGGCuGCUGCCGCu-GCUGCUGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGccCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 5871 0.67 0.55775
Target:  5'- gCG-CGGCgAGCgCGCCGCGGcggaaGCUGCgcaUGGc -3'
miRNA:   3'- -GCaGCUG-UCG-GCGGCGCC-----CGACG---ACC- -5'
23573 3' -62.2 NC_005261.1 + 118911 0.67 0.553906
Target:  5'- gCGUCuGGgucCGG-CGCCGCGGGCgcggcgccgcgcgGCUGGc -3'
miRNA:   3'- -GCAG-CU---GUCgGCGGCGCCCGa------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 60467 0.67 0.548155
Target:  5'- uCGUCGuCc-CCGCCGCcccGGCUGCguagGGg -3'
miRNA:   3'- -GCAGCuGucGGCGGCGc--CCGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 44423 0.67 0.548155
Target:  5'- gCGgUGGCGGCgGCgCGCGGGCgGCgcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCG-GCGCCCGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 42490 0.67 0.548155
Target:  5'- --cCGGCGGCgGCgGCGGcGCcGCUGa -3'
miRNA:   3'- gcaGCUGUCGgCGgCGCC-CGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 34557 0.67 0.548155
Target:  5'- aCGggCGcuCGGCC-UCGCGGGCgucGCUGGa -3'
miRNA:   3'- -GCa-GCu-GUCGGcGGCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 10901 0.67 0.548155
Target:  5'- cCGcCGcucCGGCCcCCGCGGGCgGCaGGg -3'
miRNA:   3'- -GCaGCu--GUCGGcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 56812 0.67 0.548155
Target:  5'- cCGaCGAC-GCCGCCuGUgccugGGGgaGCUGGg -3'
miRNA:   3'- -GCaGCUGuCGGCGG-CG-----CCCgaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.