miRNA display CGI


Results 181 - 200 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 54349 0.71 0.372565
Target:  5'- gGUCGAUGGCCagucccagGuCCGCGGGCagcgGCUcGGg -3'
miRNA:   3'- gCAGCUGUCGG--------C-GGCGCCCGa---CGA-CC- -5'
23573 3' -62.2 NC_005261.1 + 54637 0.67 0.567392
Target:  5'- gCGgagagCGACgcgcugcuGGCgGCCGCGGGCgccGCgGGc -3'
miRNA:   3'- -GCa----GCUG--------UCGgCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 55121 0.71 0.372565
Target:  5'- gCGgcuggCGGCGGCgGCgGCGGcGCUGgaGGc -3'
miRNA:   3'- -GCa----GCUGUCGgCGgCGCC-CGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 55160 0.69 0.429785
Target:  5'- aG-CGcCGGCCGCCGCGGGg-GCgcgcagGGa -3'
miRNA:   3'- gCaGCuGUCGGCGGCGCCCgaCGa-----CC- -5'
23573 3' -62.2 NC_005261.1 + 55427 0.66 0.625913
Target:  5'- --cCGGCugcaGGUgGCCGCGGcGgaGCUGGc -3'
miRNA:   3'- gcaGCUG----UCGgCGGCGCC-CgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 55678 0.69 0.429785
Target:  5'- uG-CGGCGcGCgGCCGCGGGCgaGgaGGg -3'
miRNA:   3'- gCaGCUGU-CGgCGGCGCCCGa-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 55712 0.66 0.613171
Target:  5'- -uUgGGCGGCCacgcgugucucuauGUCGCGGGCgUGCUGc -3'
miRNA:   3'- gcAgCUGUCGG--------------CGGCGCCCG-ACGACc -5'
23573 3' -62.2 NC_005261.1 + 55840 0.78 0.133983
Target:  5'- --aCGACGGCC-CCGCGGGCUgggcggcGCUGGc -3'
miRNA:   3'- gcaGCUGUCGGcGGCGCCCGA-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 55994 0.66 0.655318
Target:  5'- -aUCGGCAaCCGCgGCGGGg-GCgGGg -3'
miRNA:   3'- gcAGCUGUcGGCGgCGCCCgaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 56348 0.67 0.586795
Target:  5'- --cUGGCGGCCGCaGgGGGCgGgUGGg -3'
miRNA:   3'- gcaGCUGUCGGCGgCgCCCGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 56613 0.7 0.388378
Target:  5'- uCG-CGGCGGugcugaacCCGCCGCGGGC-GCcGGa -3'
miRNA:   3'- -GCaGCUGUC--------GGCGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 56812 0.67 0.548155
Target:  5'- cCGaCGAC-GCCGCCuGUgccugGGGgaGCUGGg -3'
miRNA:   3'- -GCaGCUGuCGGCGG-CG-----CCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 58533 0.7 0.412909
Target:  5'- -aUCGAgccCAGCCGCCGCccGGGCUcCUGc -3'
miRNA:   3'- gcAGCU---GUCGGCGGCG--CCCGAcGACc -5'
23573 3' -62.2 NC_005261.1 + 58704 0.7 0.380417
Target:  5'- aCGUgCGGCGGgucCCGCuCGCGGaGCUGgaGGu -3'
miRNA:   3'- -GCA-GCUGUC---GGCG-GCGCC-CGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 59062 0.68 0.482725
Target:  5'- -uUCGGCGcGCUgGCCaCgGGGCUGCUGGu -3'
miRNA:   3'- gcAGCUGU-CGG-CGGcG-CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 59468 0.69 0.477286
Target:  5'- gCGUCGgggggcagcgccggcGCGGCCGCCGCGccagcGGCgGC-GGu -3'
miRNA:   3'- -GCAGC---------------UGUCGGCGGCGC-----CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 60067 0.83 0.059608
Target:  5'- aG-CGGCGGCCGguCCGCGGGCUGCgUGGg -3'
miRNA:   3'- gCaGCUGUCGGC--GGCGCCCGACG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 60086 0.69 0.473677
Target:  5'- cCGgcagCGGCGGgCGCCG-GGGCgGCgGGg -3'
miRNA:   3'- -GCa---GCUGUCgGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 60467 0.67 0.548155
Target:  5'- uCGUCGuCc-CCGCCGCcccGGCUGCguagGGg -3'
miRNA:   3'- -GCAGCuGucGGCGGCGc--CCGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 61023 0.69 0.429785
Target:  5'- cCGUCGugGGgCGgcaCCGCGGcaGCUgGCUGGu -3'
miRNA:   3'- -GCAGCugUCgGC---GGCGCC--CGA-CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.