miRNA display CGI


Results 121 - 140 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 36812 0.68 0.50199
Target:  5'- -cUCGGCGGCCGacgucgugacgcaaGCGGcGCUGCUGc -3'
miRNA:   3'- gcAGCUGUCGGCgg------------CGCC-CGACGACc -5'
23573 3' -62.2 NC_005261.1 + 36983 0.74 0.244878
Target:  5'- gGUgCGGgcucCAGCCGgagcCCGCGGGCUGCgcgGGg -3'
miRNA:   3'- gCA-GCU----GUCGGC----GGCGCCCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 37041 0.67 0.567392
Target:  5'- aGUCGGCGGCgGCggCGUGGGacgGCgcgUGGg -3'
miRNA:   3'- gCAGCUGUCGgCG--GCGCCCga-CG---ACC- -5'
23573 3' -62.2 NC_005261.1 + 37082 0.68 0.519706
Target:  5'- gCGgCGGCGcGCCGCCGCGcGGCaGCc-- -3'
miRNA:   3'- -GCaGCUGU-CGGCGGCGC-CCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 37140 0.74 0.217941
Target:  5'- gCG-CGGCcgcgcugcaGGCgGCCGCGGGCguggUGCUGGg -3'
miRNA:   3'- -GCaGCUG---------UCGgCGGCGCCCG----ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 37184 0.67 0.586795
Target:  5'- ---gGGC-GCUGCUgGCGGcGCUGCUGGc -3'
miRNA:   3'- gcagCUGuCGGCGG-CGCC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 37200 0.67 0.577076
Target:  5'- aCGcgCGGCuGCCgGCCGCGuucacaGGCgcGCUGGa -3'
miRNA:   3'- -GCa-GCUGuCGG-CGGCGC------CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 37737 0.66 0.63572
Target:  5'- aCGcCGACGGCaCGCCGCucugcuaccGGGUgUGCUa- -3'
miRNA:   3'- -GCaGCUGUCG-GCGGCG---------CCCG-ACGAcc -5'
23573 3' -62.2 NC_005261.1 + 38008 0.72 0.327811
Target:  5'- --cCGGCGGUgGCCGagcucuacgcgGGGCUGCUGGc -3'
miRNA:   3'- gcaGCUGUCGgCGGCg----------CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 38106 0.72 0.293651
Target:  5'- gCGggggCuGCGGCCGgUGCGGGCgccGCUGGg -3'
miRNA:   3'- -GCa---GcUGUCGGCgGCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 38261 0.68 0.538613
Target:  5'- --aCGcCAGCCuggGCUGgGGGCgGCUGGu -3'
miRNA:   3'- gcaGCuGUCGG---CGGCgCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 38380 0.72 0.32075
Target:  5'- gCG-CGGCGGCCgguGCCGCuGGGCgGCgGGg -3'
miRNA:   3'- -GCaGCUGUCGG---CGGCG-CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 38766 0.66 0.63572
Target:  5'- aG-CGGCcagcGCCGCCGCGGGUcgGCc-- -3'
miRNA:   3'- gCaGCUGu---CGGCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 38834 0.71 0.357953
Target:  5'- uCGUgCGGCAGCCGCCcaGCGaGGUgcagacggucaacgcGCUGGa -3'
miRNA:   3'- -GCA-GCUGUCGGCGG--CGC-CCGa--------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 38936 0.71 0.357195
Target:  5'- aGcCGGCGGCCgggcgggccgcgGCgCGCGGGCUGCg-- -3'
miRNA:   3'- gCaGCUGUCGG------------CG-GCGCCCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 39324 0.66 0.645524
Target:  5'- gCGUCcaaccGC-GCCGCCGCGGccaaGCUGCgcgcGGc -3'
miRNA:   3'- -GCAGc----UGuCGGCGGCGCC----CGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 39671 0.67 0.596545
Target:  5'- gGagGACGGCCGCCcgccggauuucGCGGGCgcagccuaccgGCcGGa -3'
miRNA:   3'- gCagCUGUCGGCGG-----------CGCCCGa----------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 39786 0.69 0.464714
Target:  5'- aCGUCGccggggggcggcGCGGCCGCCgGCGccaGGCU-CUGGc -3'
miRNA:   3'- -GCAGC------------UGUCGGCGG-CGC---CCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 39876 0.67 0.577076
Target:  5'- --aCGGCcagcaGGCCGCgCGCGcGGCUgugcaGCUGGc -3'
miRNA:   3'- gcaGCUG-----UCGGCG-GCGC-CCGA-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 39900 0.68 0.51035
Target:  5'- gCGUCGACacggGGCgCGCCGCGcuGGCgGC-GGc -3'
miRNA:   3'- -GCAGCUG----UCG-GCGGCGC--CCGaCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.