miRNA display CGI


Results 141 - 160 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 40035 0.66 0.654339
Target:  5'- aGUCGACcgcgaccAGCgUGgCGaCGGGCccgUGCUGGa -3'
miRNA:   3'- gCAGCUG-------UCG-GCgGC-GCCCG---ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 40658 0.74 0.228399
Target:  5'- gCGUCGACAGCagcuccgcgaCGCCGuCGGGgaGCcGGc -3'
miRNA:   3'- -GCAGCUGUCG----------GCGGC-GCCCgaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 42490 0.67 0.548155
Target:  5'- --cCGGCGGCgGCgGCGGcGCcGCUGa -3'
miRNA:   3'- gcaGCUGUCGgCGgCGCC-CGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 42687 0.71 0.342275
Target:  5'- cCGcCGGCAGCCG-CGCGGccgccaGCUGCcGGa -3'
miRNA:   3'- -GCaGCUGUCGGCgGCGCC------CGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 42746 0.72 0.300254
Target:  5'- gGUCGAU-GCCGCCGCGGGCc-UUGa -3'
miRNA:   3'- gCAGCUGuCGGCGGCGCCCGacGACc -5'
23573 3' -62.2 NC_005261.1 + 43034 0.66 0.645524
Target:  5'- ---gGGCGGgCGgCGCGGGUcccaggGCUGGg -3'
miRNA:   3'- gcagCUGUCgGCgGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 43155 0.73 0.280785
Target:  5'- cCGUCG-CGGUCGCgcuCGCGGGCgUGCaUGGc -3'
miRNA:   3'- -GCAGCuGUCGGCG---GCGCCCG-ACG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 43280 0.69 0.44706
Target:  5'- gCGUCG-CGGCCGCCuuucccGCGGGggGCgccGGc -3'
miRNA:   3'- -GCAGCuGUCGGCGG------CGCCCgaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 43414 0.74 0.217941
Target:  5'- cCGggggCGGCcuccGCCGCCgGCGGGgaGCUGGc -3'
miRNA:   3'- -GCa---GCUGu---CGGCGG-CGCCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 43839 0.7 0.404626
Target:  5'- uCGUCGAggaGGCCGCCGCc-GC-GCUGGc -3'
miRNA:   3'- -GCAGCUg--UCGGCGGCGccCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 44030 0.72 0.300254
Target:  5'- ---gGGCGGCCGCCGCGcGGCgGCcgcGGg -3'
miRNA:   3'- gcagCUGUCGGCGGCGC-CCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 44275 0.71 0.357195
Target:  5'- gCGUCGACGGCCGaCCGCccggaGGCgGCg-- -3'
miRNA:   3'- -GCAGCUGUCGGC-GGCGc----CCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 44307 0.67 0.600452
Target:  5'- ---gGGCcGCUGcCCGCGGGCgccgcagacgggggGCUGGg -3'
miRNA:   3'- gcagCUGuCGGC-GGCGCCCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 44423 0.67 0.548155
Target:  5'- gCGgUGGCGGCgGCgCGCGGGCgGCgcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCG-GCGCCCGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 44996 0.75 0.211365
Target:  5'- aGgCGACGGCgGCCGCuuuuuugccgcgcuGGcGCUGCUGGa -3'
miRNA:   3'- gCaGCUGUCGgCGGCG--------------CC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 45195 0.7 0.396449
Target:  5'- -uUCGAgGGCCGCgugugCGCGGGCUugUGGg -3'
miRNA:   3'- gcAGCUgUCGGCG-----GCGCCCGAcgACC- -5'
23573 3' -62.2 NC_005261.1 + 45522 0.68 0.50477
Target:  5'- -uUCGACAGCCggcucgugcuGCCGCacuacgcuguugcccGGcuGCUGCUGGc -3'
miRNA:   3'- gcAGCUGUCGG----------CGGCG---------------CC--CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 45663 0.66 0.63572
Target:  5'- gCGggCGugAucaacGCgCGCCcCGGGCUGCUGa -3'
miRNA:   3'- -GCa-GCugU-----CG-GCGGcGCCCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 46254 0.66 0.61513
Target:  5'- cCG-CGGCGGCgGCCGCgaccguguccccgGGGCgcuCUGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGGCG-------------CCCGac-GACC- -5'
23573 3' -62.2 NC_005261.1 + 46747 0.8 0.089855
Target:  5'- gCGggCGGCGGCCGCgGCGGcGCcGCUGGg -3'
miRNA:   3'- -GCa-GCUGUCGGCGgCGCC-CGaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.