miRNA display CGI


Results 161 - 180 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 47152 0.67 0.548155
Target:  5'- aCGUCGAcCAGgCGCCGCGcguaGGC-GUUGa -3'
miRNA:   3'- -GCAGCU-GUCgGCGGCGC----CCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 47210 0.73 0.262333
Target:  5'- aGUCGcGCuccucGCCGCCG-GGGCUcaGCUGGg -3'
miRNA:   3'- gCAGC-UGu----CGGCGGCgCCCGA--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 47443 0.71 0.357195
Target:  5'- aCGUcCGACAGgCGCCcggcccgcuugcGCGGGg-GCUGGg -3'
miRNA:   3'- -GCA-GCUGUCgGCGG------------CGCCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 48835 0.67 0.567392
Target:  5'- uCGUCGGCcccGCCGCCGCGcagcaGGCccaGCgcccGGg -3'
miRNA:   3'- -GCAGCUGu--CGGCGGCGC-----CCGa--CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 49243 0.72 0.306972
Target:  5'- gGUCGGCcGCCGCCGC-GGCgGCgucGGc -3'
miRNA:   3'- gCAGCUGuCGGCGGCGcCCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 50868 0.68 0.509418
Target:  5'- gGUCGGC-GCCuucGCCGCGcuGGCgcugcuaUGCUGGu -3'
miRNA:   3'- gCAGCUGuCGG---CGGCGC--CCG-------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 50990 0.71 0.334986
Target:  5'- gGcCGACGGCgGCgCGUGGGCgcgGCgGGa -3'
miRNA:   3'- gCaGCUGUCGgCG-GCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 51316 0.71 0.334263
Target:  5'- aCGcCGGCGccGCCGCCGCcuucgucGGGCUcuucugcaccGCUGGg -3'
miRNA:   3'- -GCaGCUGU--CGGCGGCG-------CCCGA----------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 51357 0.68 0.514084
Target:  5'- gCG-CGGCcaaGGCCGCCGCGcccGGCggcguugagcgccgGCUGGc -3'
miRNA:   3'- -GCaGCUG---UCGGCGGCGC---CCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 51545 0.78 0.127808
Target:  5'- gCGUaCGugGGCCGCCucgcCGGGCUGgUGGg -3'
miRNA:   3'- -GCA-GCugUCGGCGGc---GCCCGACgACC- -5'
23573 3' -62.2 NC_005261.1 + 51938 0.66 0.625913
Target:  5'- aGggCGACGuGCC-CUGCGGGCUGUg-- -3'
miRNA:   3'- gCa-GCUGU-CGGcGGCGCCCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 51960 0.74 0.233785
Target:  5'- cCGaCGAC-GCCGCCGC--GCUGCUGGa -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGccCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 52523 0.66 0.610234
Target:  5'- -cUUGACGGCCGCCcgaaacgcuucccggGCcGGCUGCUc- -3'
miRNA:   3'- gcAGCUGUCGGCGG---------------CGcCCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 52862 0.67 0.582903
Target:  5'- cCGagGGCGGCgGCgcgaacauccucaGCGGGC-GCUGGg -3'
miRNA:   3'- -GCagCUGUCGgCGg------------CGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 53285 0.74 0.223118
Target:  5'- -cUCGGCGGCCGCCGaggaGGuGCUGCgcgaGGc -3'
miRNA:   3'- gcAGCUGUCGGCGGCg---CC-CGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 53563 0.66 0.655318
Target:  5'- uGUgCG-CGGCCGCgggCGCGGGCgGCgccagccgGGa -3'
miRNA:   3'- gCA-GCuGUCGGCG---GCGCCCGaCGa-------CC- -5'
23573 3' -62.2 NC_005261.1 + 53658 0.67 0.577076
Target:  5'- ---aGGCGGCCugGCCGCGGGUcGC-GGc -3'
miRNA:   3'- gcagCUGUCGG--CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 53854 0.68 0.51035
Target:  5'- aGgCGGCGGCCGaggccgagcCCGCGGGCgGCg-- -3'
miRNA:   3'- gCaGCUGUCGGC---------GGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 54144 0.67 0.596545
Target:  5'- aCGcCGcacGCGGCCGUgCGCgGGGUUGCcGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCG-GCG-CCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 54218 0.66 0.644544
Target:  5'- cCGUCGucuuugcGCAucCCGCCGgGGGCcGCgGGa -3'
miRNA:   3'- -GCAGC-------UGUc-GGCGGCgCCCGaCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.