miRNA display CGI


Results 101 - 120 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 103111 0.67 0.596545
Target:  5'- gGUgCGAC-GCCGCCG-GcGGCUGggGGg -3'
miRNA:   3'- gCA-GCUGuCGGCGGCgC-CCGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 102948 0.76 0.180131
Target:  5'- cCGcugCGGCGGCgGCCGCGGGCgccGCgGGc -3'
miRNA:   3'- -GCa--GCUGUCGgCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 102625 0.69 0.429785
Target:  5'- --aCGGCuGCCGCgGCGGGgCcgggcGCUGGg -3'
miRNA:   3'- gcaGCUGuCGGCGgCGCCC-Ga----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 102485 0.66 0.645524
Target:  5'- -cUCGGCGcGCCGCCGCgccagcgccuGGGCcuUGCgcaGGu -3'
miRNA:   3'- gcAGCUGU-CGGCGGCG----------CCCG--ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 102277 0.66 0.625913
Target:  5'- gGUCGGCcugccgcgccAGCgGCCGCGGGUcGUa-- -3'
miRNA:   3'- gCAGCUG----------UCGgCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 102233 0.67 0.586795
Target:  5'- -cUCGAUGGCCGCCGuCGcccGCUGCg-- -3'
miRNA:   3'- gcAGCUGUCGGCGGC-GCc--CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 101428 0.68 0.51035
Target:  5'- aCGUCGGCcGCCGagGCGGcGCgguccagcGCUGGc -3'
miRNA:   3'- -GCAGCUGuCGGCggCGCC-CGa-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 101235 0.66 0.61611
Target:  5'- cCG-CG-CAGC--CCGCGGGCUccgGCUGGa -3'
miRNA:   3'- -GCaGCuGUCGgcGGCGCCCGA---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 100925 0.69 0.455841
Target:  5'- gCGUCGccuGCAGCCGCUGCaGGCccGCg-- -3'
miRNA:   3'- -GCAGC---UGUCGGCGGCGcCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 99748 0.8 0.092167
Target:  5'- aGUCGAC-GCCGCCGCGGccguGCUGCUccaGGa -3'
miRNA:   3'- gCAGCUGuCGGCGGCGCC----CGACGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 99605 0.67 0.571261
Target:  5'- cCGUCGGCggcgggcucggccgcGGCCaacacccgccaGCCGCGGGCcGCcagcagGGa -3'
miRNA:   3'- -GCAGCUG---------------UCGG-----------CGGCGCCCGaCGa-----CC- -5'
23573 3' -62.2 NC_005261.1 + 98881 0.68 0.538613
Target:  5'- aGgCGGCuGCCGCCGCGcGCaGCuUGGc -3'
miRNA:   3'- gCaGCUGuCGGCGGCGCcCGaCG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 98738 0.66 0.61611
Target:  5'- --aCG-CGGCCG-CGCGGGC-GUUGGc -3'
miRNA:   3'- gcaGCuGUCGGCgGCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 98672 0.7 0.421297
Target:  5'- gGggGACAGaCCGCCGCGcGcGCgcgggGCUGGc -3'
miRNA:   3'- gCagCUGUC-GGCGGCGC-C-CGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 98476 0.68 0.519706
Target:  5'- ---gGGCGGCCGuccuCCGCGGGCUcggGCgGGu -3'
miRNA:   3'- gcagCUGUCGGC----GGCGCCCGA---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 98347 0.72 0.287161
Target:  5'- --cUGcACAGCCGCgCGCGcGGCcUGCUGGc -3'
miRNA:   3'- gcaGC-UGUCGGCG-GCGC-CCG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 98346 0.68 0.529129
Target:  5'- uGUCGACgcgggggcgggGGUgGgCGCGGGCU-CUGGc -3'
miRNA:   3'- gCAGCUG-----------UCGgCgGCGCCCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 98178 0.69 0.455841
Target:  5'- uGUCcuuGgAGCCGCCGgGGGCgcgGCgGGc -3'
miRNA:   3'- gCAGc--UgUCGGCGGCgCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 98147 0.83 0.059608
Target:  5'- cCGUCGGCGGCaagGCCGCGGGCgGCgGGu -3'
miRNA:   3'- -GCAGCUGUCGg--CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 98043 0.69 0.464714
Target:  5'- gGUacUGGCGGCCGCgggcggcgggacCGCGGGCgGCgGGu -3'
miRNA:   3'- gCA--GCUGUCGGCG------------GCGCCCGaCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.