miRNA display CGI


Results 121 - 140 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 97841 0.66 0.606319
Target:  5'- aCGggggCGGCGggcGCCGCCGCGGcaGCgcgGCcGGc -3'
miRNA:   3'- -GCa---GCUGU---CGGCGGCGCC--CGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 97567 0.72 0.313804
Target:  5'- --cCGACGG-CGUCGCGGaGCUGCUGu -3'
miRNA:   3'- gcaGCUGUCgGCGGCGCC-CGACGACc -5'
23573 3' -62.2 NC_005261.1 + 97382 0.69 0.455841
Target:  5'- uGUCGccgcGCGGCUuucgcgccuGCCGCGGGCUugGCgGGc -3'
miRNA:   3'- gCAGC----UGUCGG---------CGGCGCCCGA--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 95945 0.66 0.625913
Target:  5'- uGggCGACAuCuCGCgGC-GGCUGCUGGg -3'
miRNA:   3'- gCa-GCUGUcG-GCGgCGcCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 95742 0.66 0.645524
Target:  5'- aG-CGGCGccgccgccGCCGCCGgGGGC-GCcGGg -3'
miRNA:   3'- gCaGCUGU--------CGGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 95536 0.73 0.250587
Target:  5'- --cCGGCAGCUggcgGCCGCGcGGCUGCcGGc -3'
miRNA:   3'- gcaGCUGUCGG----CGGCGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 94472 0.66 0.625913
Target:  5'- gCGUCGGC-GUCGucCCGCGGGCcggGCa-- -3'
miRNA:   3'- -GCAGCUGuCGGC--GGCGCCCGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 94194 0.68 0.501065
Target:  5'- cCGcCcGCGGCCGCCGCGcGGCgGCc-- -3'
miRNA:   3'- -GCaGcUGUCGGCGGCGC-CCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 93918 0.66 0.625913
Target:  5'- cCGUCuGCGGCgC-CCGCGGGCaGC-GGc -3'
miRNA:   3'- -GCAGcUGUCG-GcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 92959 0.66 0.61611
Target:  5'- gGUaCGGCAGCacgGCgGCGGGCacggUGgUGGc -3'
miRNA:   3'- gCA-GCUGUCGg--CGgCGCCCG----ACgACC- -5'
23573 3' -62.2 NC_005261.1 + 92589 0.68 0.501065
Target:  5'- aCGcgCGagcGCAGCCGCuCGCGGcGCgUGCcGGg -3'
miRNA:   3'- -GCa-GC---UGUCGGCG-GCGCC-CG-ACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 91978 0.71 0.342275
Target:  5'- aCGgucgCGGCcGCCGCCGCGGcCUGCg-- -3'
miRNA:   3'- -GCa---GCUGuCGGCGGCGCCcGACGacc -5'
23573 3' -62.2 NC_005261.1 + 91721 0.67 0.567392
Target:  5'- gGcCGGCucGCCGCgGCGGGCUucGC-GGc -3'
miRNA:   3'- gCaGCUGu-CGGCGgCGCCCGA--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 91548 0.69 0.464714
Target:  5'- cCGU-GGCGGCCGCCGUGGaGC-GCgcGGc -3'
miRNA:   3'- -GCAgCUGUCGGCGGCGCC-CGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 91481 0.66 0.613171
Target:  5'- aG-CGGC-GCCGCCGCGGccgccGCccgccccgcgcgccUGCUGGu -3'
miRNA:   3'- gCaGCUGuCGGCGGCGCC-----CG--------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 91426 0.7 0.420453
Target:  5'- gCG-CGAC-GCCGCCGCGGugaacgcGCUGCgcGGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-------CGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 91321 0.66 0.60534
Target:  5'- ---gGACAGCCccGCgugcgugCGCGGGCUcugGCUGGc -3'
miRNA:   3'- gcagCUGUCGG--CG-------GCGCCCGA---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 91236 0.66 0.645524
Target:  5'- uCG-CGGCGGCgCGgCGCGcGCUGCcGGc -3'
miRNA:   3'- -GCaGCUGUCG-GCgGCGCcCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 91201 0.66 0.61611
Target:  5'- ---gGACAgcgccGCCGUCGCGGG--GCUGGa -3'
miRNA:   3'- gcagCUGU-----CGGCGGCGCCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 90784 0.67 0.548155
Target:  5'- cCGcugCGGCGGCCGgCGCGcGCUaccgcgugcGCUGGu -3'
miRNA:   3'- -GCa--GCUGUCGGCgGCGCcCGA---------CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.