miRNA display CGI


Results 141 - 160 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 90538 0.72 0.300254
Target:  5'- cCGcCGACGcGgCGCCGCGGGCggccgUGCUGc -3'
miRNA:   3'- -GCaGCUGU-CgGCGGCGCCCG-----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 90488 0.76 0.167519
Target:  5'- gGUgGACga-CGCCaGCGGGCUGCUGGu -3'
miRNA:   3'- gCAgCUGucgGCGG-CGCCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 89590 0.67 0.576105
Target:  5'- cCGggCGGgGGCCGgCGCaggggcgGGGCgugggGCUGGg -3'
miRNA:   3'- -GCa-GCUgUCGGCgGCG-------CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 89416 0.67 0.590692
Target:  5'- -cUCGGCGcgugcGCgGCCGcCGGGCuccccgcgcccgccgUGCUGGa -3'
miRNA:   3'- gcAGCUGU-----CGgCGGC-GCCCG---------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 89358 0.71 0.342275
Target:  5'- -uUCGGCGGCugCGCCGCcauggcccGGGC-GCUGGg -3'
miRNA:   3'- gcAGCUGUCG--GCGGCG--------CCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 89251 0.67 0.577076
Target:  5'- -aUCGAguGCCuGUCguguGCGGGCgacggGCUGGc -3'
miRNA:   3'- gcAGCUguCGG-CGG----CGCCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 89088 0.66 0.61611
Target:  5'- --cCGGCuGCgGCC-CGGGCgcGCUGGc -3'
miRNA:   3'- gcaGCUGuCGgCGGcGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 88981 0.71 0.334263
Target:  5'- gCGcCGAC-GCCGCCGCGGcggcggccgaccuGCgcgcGCUGGg -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-------------CGa---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 88933 0.69 0.464714
Target:  5'- gCG-CGGCGcucaCCGCCGCGGGCUuCUGc -3'
miRNA:   3'- -GCaGCUGUc---GGCGGCGCCCGAcGACc -5'
23573 3' -62.2 NC_005261.1 + 88189 0.7 0.395637
Target:  5'- uCG-CGGCGGCgcugcacCGUCGCGcGGCgGCUGGg -3'
miRNA:   3'- -GCaGCUGUCG-------GCGGCGC-CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 88035 0.75 0.189001
Target:  5'- gGUCGACGcGCUGCUGCaccGGCUGCUGcGg -3'
miRNA:   3'- gCAGCUGU-CGGCGGCGc--CCGACGAC-C- -5'
23573 3' -62.2 NC_005261.1 + 87875 0.68 0.538613
Target:  5'- aCGUgaUGACGGgCGCgGCcuaccggcGGCUGCUGGu -3'
miRNA:   3'- -GCA--GCUGUCgGCGgCGc-------CCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 87788 0.72 0.313804
Target:  5'- cCGUCu-UGGCCGCCGCGuccauggccGGCgggGCUGGg -3'
miRNA:   3'- -GCAGcuGUCGGCGGCGC---------CCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 87716 0.67 0.55775
Target:  5'- --aCGACGGCCcuGCUGCGcuGGCUgggcgaggcGCUGGg -3'
miRNA:   3'- gcaGCUGUCGG--CGGCGC--CCGA---------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 87450 0.71 0.357195
Target:  5'- cCGgggCGGCcGCCGCCGCGGuGUgcGCUGa -3'
miRNA:   3'- -GCa--GCUGuCGGCGGCGCC-CGa-CGACc -5'
23573 3' -62.2 NC_005261.1 + 87405 0.66 0.63572
Target:  5'- -cUCGACGgcGCCGUCGaCGGGCgcGCcGGc -3'
miRNA:   3'- gcAGCUGU--CGGCGGC-GCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 86922 0.71 0.357195
Target:  5'- gCGUCcaccGCcGCCGCCGCGcgcGGCggGCUGGu -3'
miRNA:   3'- -GCAGc---UGuCGGCGGCGC---CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 86249 0.68 0.519706
Target:  5'- aGUCGGCGGCggCGCCGCGGuccaGCaGCgcGGc -3'
miRNA:   3'- gCAGCUGUCG--GCGGCGCC----CGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 86208 0.66 0.625913
Target:  5'- gCGUCGGCGcGCCGaaCCG-GGGCaGCcGGu -3'
miRNA:   3'- -GCAGCUGU-CGGC--GGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 85863 0.71 0.334986
Target:  5'- cCGg-GGCcGCCGCCGCGGGCUccgGCUccGGc -3'
miRNA:   3'- -GCagCUGuCGGCGGCGCCCGA---CGA--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.