miRNA display CGI


Results 161 - 180 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 85372 0.67 0.596545
Target:  5'- uGUUcGC-GCCGCCGCccucGGGCUuCUGGu -3'
miRNA:   3'- gCAGcUGuCGGCGGCG----CCCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 85196 0.67 0.596545
Target:  5'- --cCGACGGCugccccggCGCCGCGGaaGC-GCUGGc -3'
miRNA:   3'- gcaGCUGUCG--------GCGGCGCC--CGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 85118 0.74 0.244878
Target:  5'- uGUUGGCGGCgcgcagCGCCGCGGcGCUGCg-- -3'
miRNA:   3'- gCAGCUGUCG------GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 84953 0.69 0.473677
Target:  5'- -cUCGGCGGCCGCCGaggcguCGGGC-GCg-- -3'
miRNA:   3'- gcAGCUGUCGGCGGC------GCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 84489 0.66 0.61611
Target:  5'- aCGUcCGGCAcguGCuCGCCcguGCGGGCgcgccgcaGCUGGc -3'
miRNA:   3'- -GCA-GCUGU---CG-GCGG---CGCCCGa-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 84359 0.69 0.438374
Target:  5'- aGUCGAaggcGCCGcCCGCGGGCUcgGCcucGGc -3'
miRNA:   3'- gCAGCUgu--CGGC-GGCGCCCGA--CGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 83172 0.67 0.586795
Target:  5'- -uUCGGCGGCCGagcucgccggccCCGCGcaGCUGCgcgGGg -3'
miRNA:   3'- gcAGCUGUCGGC------------GGCGCc-CGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 82990 0.66 0.655318
Target:  5'- -cUCG-CGGCgGCUGCGGuGCUGCc-- -3'
miRNA:   3'- gcAGCuGUCGgCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 82854 0.8 0.099447
Target:  5'- gCGgCGGCAGCgGCgGCGGGCcagGCUGGg -3'
miRNA:   3'- -GCaGCUGUCGgCGgCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 82649 0.74 0.239278
Target:  5'- uGggCGAC-GCCGCCGCGGaCUGCgGGg -3'
miRNA:   3'- gCa-GCUGuCGGCGGCGCCcGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 81433 0.71 0.357195
Target:  5'- gCGUCGuCGGCCGCCccgcgGCGGGCgccgccagcaGCaGGg -3'
miRNA:   3'- -GCAGCuGUCGGCGG-----CGCCCGa---------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 80939 0.68 0.519706
Target:  5'- aCGUCGcGCGGCUGCuCGCGaGCaGCUGc -3'
miRNA:   3'- -GCAGC-UGUCGGCG-GCGCcCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 80114 0.68 0.501065
Target:  5'- aCGcUCGGCAgGCUGCuCGCGcGGCUGgUGc -3'
miRNA:   3'- -GC-AGCUGU-CGGCG-GCGC-CCGACgACc -5'
23573 3' -62.2 NC_005261.1 + 80050 0.67 0.548155
Target:  5'- cCGUCGccacugGCGGCgGgCGCGGGggGCgUGGg -3'
miRNA:   3'- -GCAGC------UGUCGgCgGCGCCCgaCG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 80001 0.8 0.092167
Target:  5'- cCGagGACcccGCCGCCGCGGGCgcgcUGCUGGc -3'
miRNA:   3'- -GCagCUGu--CGGCGGCGCCCG----ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 79684 0.69 0.455841
Target:  5'- --aCGACGGCgcaggaGCC-CGGGCggcgGCUGGg -3'
miRNA:   3'- gcaGCUGUCGg-----CGGcGCCCGa---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 79267 0.7 0.396449
Target:  5'- -uUCGACgcGGgCGCCGaGGcGCUGCUGGc -3'
miRNA:   3'- gcAGCUG--UCgGCGGCgCC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 78887 0.67 0.596545
Target:  5'- uCGUggCGACGGCgGCgacccgGCGGGCgcgcacGCUGGc -3'
miRNA:   3'- -GCA--GCUGUCGgCGg-----CGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 78850 0.72 0.32075
Target:  5'- -cUCGGC-GCCGUggCGCGGGC-GCUGGc -3'
miRNA:   3'- gcAGCUGuCGGCG--GCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 78733 0.7 0.404626
Target:  5'- gCGUgCGACcGCCGCCGCuGGCgcgGC-GGc -3'
miRNA:   3'- -GCA-GCUGuCGGCGGCGcCCGa--CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.