Results 181 - 200 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 3' | -62.2 | NC_005261.1 | + | 87450 | 0.71 | 0.357195 |
Target: 5'- cCGgggCGGCcGCCGCCGCGGuGUgcGCUGa -3' miRNA: 3'- -GCa--GCUGuCGGCGGCGCC-CGa-CGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 129441 | 0.71 | 0.357195 |
Target: 5'- uCGgCGgcuGCAGCCGCCGagGGGCagaGCUGGc -3' miRNA: 3'- -GCaGC---UGUCGGCGGCg-CCCGa--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 70751 | 0.71 | 0.357195 |
Target: 5'- --cUGGCGGCgGCCGCGGGCUuccuguacGCgGGc -3' miRNA: 3'- gcaGCUGUCGgCGGCGCCCGA--------CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 6754 | 0.71 | 0.357195 |
Target: 5'- gCGUCGACGGCgCGCuCGCGGagGCgGgaGGc -3' miRNA: 3'- -GCAGCUGUCG-GCG-GCGCC--CGaCgaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 44275 | 0.71 | 0.357195 |
Target: 5'- gCGUCGACGGCCGaCCGCccggaGGCgGCg-- -3' miRNA: 3'- -GCAGCUGUCGGC-GGCGc----CCGaCGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 134711 | 0.71 | 0.348933 |
Target: 5'- ---aGGCGGCCGCCGCGcuggagcGGCcgcGCUGGc -3' miRNA: 3'- gcagCUGUCGGCGGCGC-------CCGa--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 104769 | 0.71 | 0.342275 |
Target: 5'- cCGgcugCGGCGGCgGCUGCGGGgCgGCUGcGg -3' miRNA: 3'- -GCa---GCUGUCGgCGGCGCCC-GaCGAC-C- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 136787 | 0.71 | 0.372565 |
Target: 5'- aCGcCGAgGcGCCGCCGCuGG-UGCUGGa -3' miRNA: 3'- -GCaGCUgU-CGGCGGCGcCCgACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 127733 | 0.71 | 0.375692 |
Target: 5'- aG-CGGCGGCCGCCGCaaaagccggugcagcGGGCcggccUGCUcGGg -3' miRNA: 3'- gCaGCUGUCGGCGGCG---------------CCCG-----ACGA-CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 58704 | 0.7 | 0.380417 |
Target: 5'- aCGUgCGGCGGgucCCGCuCGCGGaGCUGgaGGu -3' miRNA: 3'- -GCA-GCUGUC---GGCG-GCGCC-CGACgaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 78733 | 0.7 | 0.404626 |
Target: 5'- gCGUgCGACcGCCGCCGCuGGCgcgGC-GGc -3' miRNA: 3'- -GCA-GCUGuCGGCGGCGcCCGa--CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 26557 | 0.7 | 0.396449 |
Target: 5'- uCGcCGACGuacGCCGCCaccgcggcGCGGGaggGCUGGg -3' miRNA: 3'- -GCaGCUGU---CGGCGG--------CGCCCga-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 104810 | 0.7 | 0.396449 |
Target: 5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3' miRNA: 3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 45195 | 0.7 | 0.396449 |
Target: 5'- -uUCGAgGGCCGCgugugCGCGGGCUugUGGg -3' miRNA: 3'- gcAGCUgUCGGCG-----GCGCCCGAcgACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 14001 | 0.7 | 0.396449 |
Target: 5'- cCG-CGGCGGCgGU--UGGGCUGCUGGc -3' miRNA: 3'- -GCaGCUGUCGgCGgcGCCCGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 79267 | 0.7 | 0.396449 |
Target: 5'- -uUCGACgcGGgCGCCGaGGcGCUGCUGGc -3' miRNA: 3'- gcAGCUG--UCgGCGGCgCC-CGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 88189 | 0.7 | 0.395637 |
Target: 5'- uCG-CGGCGGCgcugcacCGUCGCGcGGCgGCUGGg -3' miRNA: 3'- -GCaGCUGUCG-------GCGGCGC-CCGaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 138116 | 0.7 | 0.388378 |
Target: 5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3' miRNA: 3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 56613 | 0.7 | 0.388378 |
Target: 5'- uCG-CGGCGGugcugaacCCGCCGCGGGC-GCcGGa -3' miRNA: 3'- -GCaGCUGUC--------GGCGGCGCCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 433 | 0.7 | 0.388378 |
Target: 5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3' miRNA: 3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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