miRNA display CGI


Results 81 - 100 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 33416 0.72 0.32075
Target:  5'- cCG-CGAC-GCCGCUGCGGaGCgggacccGCUGGa -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-CGa------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 78850 0.72 0.32075
Target:  5'- -cUCGGC-GCCGUggCGCGGGC-GCUGGc -3'
miRNA:   3'- gcAGCUGuCGGCG--GCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 38008 0.72 0.327811
Target:  5'- --cCGGCGGUgGCCGagcucuacgcgGGGCUGCUGGc -3'
miRNA:   3'- gcaGCUGUCGgCGGCg----------CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 88981 0.71 0.334263
Target:  5'- gCGcCGAC-GCCGCCGCGGcggcggccgaccuGCgcgcGCUGGg -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-------------CGa---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 133371 0.71 0.334986
Target:  5'- cCGUCG-UGGCCGCCGCccuugaGGCUGCggcgcGGa -3'
miRNA:   3'- -GCAGCuGUCGGCGGCGc-----CCGACGa----CC- -5'
23573 3' -62.2 NC_005261.1 + 85863 0.71 0.334986
Target:  5'- cCGg-GGCcGCCGCCGCGGGCUccgGCUccGGc -3'
miRNA:   3'- -GCagCUGuCGGCGGCGCCCGA---CGA--CC- -5'
23573 3' -62.2 NC_005261.1 + 108332 0.71 0.342275
Target:  5'- cCGcUCG-CGcGCUGCCGCGGGCccgggcGCUGGc -3'
miRNA:   3'- -GC-AGCuGU-CGGCGGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 90538 0.72 0.300254
Target:  5'- cCGcCGACGcGgCGCCGCGGGCggccgUGCUGc -3'
miRNA:   3'- -GCaGCUGU-CgGCGGCGCCCG-----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 66794 0.72 0.300254
Target:  5'- gCGgCGGCuGCgCGCCGCGGGCccggGCcGGg -3'
miRNA:   3'- -GCaGCUGuCG-GCGGCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 42746 0.72 0.300254
Target:  5'- gGUCGAU-GCCGCCGCGGGCc-UUGa -3'
miRNA:   3'- gCAGCUGuCGGCGGCGCCCGacGACc -5'
23573 3' -62.2 NC_005261.1 + 70931 0.73 0.273902
Target:  5'- cCGaCGGCGGCgCGCgCGCGGcggcgggggggcuGCUGCUGGc -3'
miRNA:   3'- -GCaGCUGUCG-GCG-GCGCC-------------CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 64172 0.73 0.280785
Target:  5'- gCGUCGcGCAGCUGCCGCagccccccGGCgcGCUGGu -3'
miRNA:   3'- -GCAGC-UGUCGGCGGCGc-------CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 3470 0.73 0.280785
Target:  5'- gGUCcGCcauGCCGCCGCGGGUcGCgGGu -3'
miRNA:   3'- gCAGcUGu--CGGCGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 43155 0.73 0.280785
Target:  5'- cCGUCG-CGGUCGCgcuCGCGGGCgUGCaUGGc -3'
miRNA:   3'- -GCAGCuGUCGGCG---GCGCCCG-ACG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 7035 0.72 0.287161
Target:  5'- gCGcCGGCGGCgaccgCGCCGCGGGCguagccGCUGcGg -3'
miRNA:   3'- -GCaGCUGUCG-----GCGGCGCCCGa-----CGAC-C- -5'
23573 3' -62.2 NC_005261.1 + 98347 0.72 0.287161
Target:  5'- --cUGcACAGCCGCgCGCGcGGCcUGCUGGc -3'
miRNA:   3'- gcaGC-UGUCGGCG-GCGC-CCG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 38106 0.72 0.293651
Target:  5'- gCGggggCuGCGGCCGgUGCGGGCgccGCUGGg -3'
miRNA:   3'- -GCa---GcUGUCGGCgGCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 22221 0.72 0.300254
Target:  5'- cCGUCGGCggcucaGGCCGCCuCGGGCgGCUc- -3'
miRNA:   3'- -GCAGCUG------UCGGCGGcGCCCGaCGAcc -5'
23573 3' -62.2 NC_005261.1 + 33721 0.72 0.300254
Target:  5'- cCGUCG-CGGCCGCCaCGGaGCgGCUGc -3'
miRNA:   3'- -GCAGCuGUCGGCGGcGCC-CGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 89358 0.71 0.342275
Target:  5'- -uUCGGCGGCugCGCCGCcauggcccGGGC-GCUGGg -3'
miRNA:   3'- gcAGCUGUCG--GCGGCG--------CCCGaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.