miRNA display CGI


Results 121 - 140 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 88189 0.7 0.395637
Target:  5'- uCG-CGGCGGCgcugcacCGUCGCGcGGCgGCUGGg -3'
miRNA:   3'- -GCaGCUGUCG-------GCGGCGC-CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 79267 0.7 0.396449
Target:  5'- -uUCGACgcGGgCGCCGaGGcGCUGCUGGc -3'
miRNA:   3'- gcAGCUG--UCgGCGGCgCC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 44275 0.71 0.357195
Target:  5'- gCGUCGACGGCCGaCCGCccggaGGCgGCg-- -3'
miRNA:   3'- -GCAGCUGUCGGC-GGCGc----CCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 134711 0.71 0.348933
Target:  5'- ---aGGCGGCCGCCGCGcuggagcGGCcgcGCUGGc -3'
miRNA:   3'- gcagCUGUCGGCGGCGC-------CCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 104769 0.71 0.342275
Target:  5'- cCGgcugCGGCGGCgGCUGCGGGgCgGCUGcGg -3'
miRNA:   3'- -GCa---GCUGUCGgCGGCGCCC-GaCGAC-C- -5'
23573 3' -62.2 NC_005261.1 + 66794 0.72 0.300254
Target:  5'- gCGgCGGCuGCgCGCCGCGGGCccggGCcGGg -3'
miRNA:   3'- -GCaGCUGuCG-GCGGCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 90538 0.72 0.300254
Target:  5'- cCGcCGACGcGgCGCCGCGGGCggccgUGCUGc -3'
miRNA:   3'- -GCaGCUGU-CgGCGGCGCCCG-----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 70790 0.72 0.300254
Target:  5'- gCGgacCGGCuGCCcuuugggcgcugGCCGCGGGCgcUGCUGGc -3'
miRNA:   3'- -GCa--GCUGuCGG------------CGGCGCCCG--ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 97567 0.72 0.313804
Target:  5'- --cCGACGG-CGUCGCGGaGCUGCUGu -3'
miRNA:   3'- gcaGCUGUCgGCGGCGCC-CGACGACc -5'
23573 3' -62.2 NC_005261.1 + 38380 0.72 0.32075
Target:  5'- gCG-CGGCGGCCgguGCCGCuGGGCgGCgGGg -3'
miRNA:   3'- -GCaGCUGUCGG---CGGCG-CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 33416 0.72 0.32075
Target:  5'- cCG-CGAC-GCCGCUGCGGaGCgggacccGCUGGa -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-CGa------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 78850 0.72 0.32075
Target:  5'- -cUCGGC-GCCGUggCGCGGGC-GCUGGc -3'
miRNA:   3'- gcAGCUGuCGGCG--GCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 14001 0.7 0.396449
Target:  5'- cCG-CGGCGGCgGU--UGGGCUGCUGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGgcGCCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 38008 0.72 0.327811
Target:  5'- --cCGGCGGUgGCCGagcucuacgcgGGGCUGCUGGc -3'
miRNA:   3'- gcaGCUGUCGgCGGCg----------CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 88981 0.71 0.334263
Target:  5'- gCGcCGAC-GCCGCCGCGGcggcggccgaccuGCgcgcGCUGGg -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-------------CGa---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 133371 0.71 0.334986
Target:  5'- cCGUCG-UGGCCGCCGCccuugaGGCUGCggcgcGGa -3'
miRNA:   3'- -GCAGCuGUCGGCGGCGc-----CCGACGa----CC- -5'
23573 3' -62.2 NC_005261.1 + 85863 0.71 0.334986
Target:  5'- cCGg-GGCcGCCGCCGCGGGCUccgGCUccGGc -3'
miRNA:   3'- -GCagCUGuCGGCGGCGCCCGA---CGA--CC- -5'
23573 3' -62.2 NC_005261.1 + 108332 0.71 0.342275
Target:  5'- cCGcUCG-CGcGCUGCCGCGGGCccgggcGCUGGc -3'
miRNA:   3'- -GC-AGCuGU-CGGCGGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 89358 0.71 0.342275
Target:  5'- -uUCGGCGGCugCGCCGCcauggcccGGGC-GCUGGg -3'
miRNA:   3'- gcAGCUGUCG--GCGGCG--------CCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 91978 0.71 0.342275
Target:  5'- aCGgucgCGGCcGCCGCCGCGGcCUGCg-- -3'
miRNA:   3'- -GCa---GCUGuCGGCGGCGCCcGACGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.