miRNA display CGI


Results 81 - 100 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 52523 0.66 0.610234
Target:  5'- -cUUGACGGCCGCCcgaaacgcuucccggGCcGGCUGCUc- -3'
miRNA:   3'- gcAGCUGUCGGCGG---------------CGcCCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 33458 0.66 0.60534
Target:  5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3'
miRNA:   3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 44307 0.67 0.600452
Target:  5'- ---gGGCcGCUGcCCGCGGGCgccgcagacgggggGCUGGg -3'
miRNA:   3'- gcagCUGuCGGC-GGCGCCCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 89416 0.67 0.590692
Target:  5'- -cUCGGCGcgugcGCgGCCGcCGGGCuccccgcgcccgccgUGCUGGa -3'
miRNA:   3'- gcAGCUGU-----CGgCGGC-GCCCG---------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 23546 0.67 0.586795
Target:  5'- aGgCGGCaggAGCCGUCGCaggugGGGCaggGCUGGc -3'
miRNA:   3'- gCaGCUG---UCGGCGGCG-----CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 104277 0.67 0.567392
Target:  5'- -cUCGGCGGCUG-CGCGGGCcucGCaGGc -3'
miRNA:   3'- gcAGCUGUCGGCgGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 33816 0.67 0.567392
Target:  5'- uGUCuuugGGCGGCCGgggggCGCGGGCccccuggcGCUGGg -3'
miRNA:   3'- gCAG----CUGUCGGCg----GCGCCCGa-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 86208 0.66 0.625913
Target:  5'- gCGUCGGCGcGCCGaaCCG-GGGCaGCcGGu -3'
miRNA:   3'- -GCAGCUGU-CGGC--GGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 3397 0.66 0.625913
Target:  5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3'
miRNA:   3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5'
23573 3' -62.2 NC_005261.1 + 68282 0.66 0.63572
Target:  5'- gCG-CGGCggGGCCccgGCCGCGGGC-GC-GGa -3'
miRNA:   3'- -GCaGCUG--UCGG---CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 118911 0.67 0.553906
Target:  5'- gCGUCuGGgucCGG-CGCCGCGGGCgcggcgccgcgcgGCUGGc -3'
miRNA:   3'- -GCAG-CU---GUCgGCGGCGCCCGa------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 125271 0.68 0.538613
Target:  5'- uCGUcCGGgGGCCgcuggaagucagGCCGCGGGC-GCcGGa -3'
miRNA:   3'- -GCA-GCUgUCGG------------CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 98346 0.68 0.529129
Target:  5'- uGUCGACgcgggggcgggGGUgGgCGCGGGCU-CUGGc -3'
miRNA:   3'- gCAGCUG-----------UCGgCgGCGCCCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 113285 0.68 0.519706
Target:  5'- aCGagGGCGugguccucucGCUGCCGCGGGC--CUGGg -3'
miRNA:   3'- -GCagCUGU----------CGGCGGCGCCCGacGACC- -5'
23573 3' -62.2 NC_005261.1 + 118383 0.68 0.519706
Target:  5'- gCG-CGGCccgaggcgcuGGCgGCCGCGGGCgccgcagccgcGCUGGc -3'
miRNA:   3'- -GCaGCUG----------UCGgCGGCGCCCGa----------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 17179 0.66 0.655318
Target:  5'- gCGUgGGCAGCCcuGCCGC-GGCgGCg-- -3'
miRNA:   3'- -GCAgCUGUCGG--CGGCGcCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 75857 0.66 0.645524
Target:  5'- gCGcCGACGGCggccccgacggCGCCGUGGGC-GCg-- -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 95742 0.66 0.645524
Target:  5'- aG-CGGCGccgccgccGCCGCCGgGGGC-GCcGGg -3'
miRNA:   3'- gCaGCUGU--------CGGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 20695 0.66 0.644544
Target:  5'- gGUUGACGGCUacaaccuGCUGaacuCGGGCcgcGCUGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGC----GCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 133886 0.66 0.63572
Target:  5'- gGUCuGCgcaAGcCCGCgGCGcGCUGCUGGc -3'
miRNA:   3'- gCAGcUG---UC-GGCGgCGCcCGACGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.