miRNA display CGI


Results 101 - 120 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 19028 0.68 0.528183
Target:  5'- gCGUCGcgggGCAGCCggagaGCCGCcaggcagggguacGGGCUGCgcGGc -3'
miRNA:   3'- -GCAGC----UGUCGG-----CGGCG-------------CCCGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 98476 0.68 0.519706
Target:  5'- ---gGGCGGCCGuccuCCGCGGGCUcggGCgGGu -3'
miRNA:   3'- gcagCUGUCGGC----GGCGCCCGA---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 101428 0.68 0.51035
Target:  5'- aCGUCGGCcGCCGagGCGGcGCgguccagcGCUGGc -3'
miRNA:   3'- -GCAGCUGuCGGCggCGCC-CGa-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 45522 0.68 0.50477
Target:  5'- -uUCGACAGCCggcucgugcuGCCGCacuacgcuguugcccGGcuGCUGCUGGc -3'
miRNA:   3'- gcAGCUGUCGG----------CGGCG---------------CC--CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 127680 0.68 0.482725
Target:  5'- aCGgCGGCGGCCGCUGCcccGGCgGCgccGGa -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGc--CCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 89416 0.67 0.590692
Target:  5'- -cUCGGCGcgugcGCgGCCGcCGGGCuccccgcgcccgccgUGCUGGa -3'
miRNA:   3'- gcAGCUGU-----CGgCGGC-GCCCG---------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 44307 0.67 0.600452
Target:  5'- ---gGGCcGCUGcCCGCGGGCgccgcagacgggggGCUGGg -3'
miRNA:   3'- gcagCUGuCGGC-GGCGCCCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 17179 0.66 0.655318
Target:  5'- gCGUgGGCAGCCcuGCCGC-GGCgGCg-- -3'
miRNA:   3'- -GCAgCUGUCGG--CGGCGcCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 75857 0.66 0.645524
Target:  5'- gCGcCGACGGCggccccgacggCGCCGUGGGC-GCg-- -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 95742 0.66 0.645524
Target:  5'- aG-CGGCGccgccgccGCCGCCGgGGGC-GCcGGg -3'
miRNA:   3'- gCaGCUGU--------CGGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 20695 0.66 0.644544
Target:  5'- gGUUGACGGCUacaaccuGCUGaacuCGGGCcgcGCUGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGC----GCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 133886 0.66 0.63572
Target:  5'- gGUCuGCgcaAGcCCGCgGCGcGCUGCUGGc -3'
miRNA:   3'- gCAGcUG---UC-GGCGgCGCcCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 68282 0.66 0.63572
Target:  5'- gCG-CGGCggGGCCccgGCCGCGGGC-GC-GGa -3'
miRNA:   3'- -GCaGCUG--UCGG---CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 3397 0.66 0.625913
Target:  5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3'
miRNA:   3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5'
23573 3' -62.2 NC_005261.1 + 86208 0.66 0.625913
Target:  5'- gCGUCGGCGcGCCGaaCCG-GGGCaGCcGGu -3'
miRNA:   3'- -GCAGCUGU-CGGC--GGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 69351 0.66 0.61611
Target:  5'- aCGgCGACGacGCgGCCGCGcGCgcGCUGGa -3'
miRNA:   3'- -GCaGCUGU--CGgCGGCGCcCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 121476 0.66 0.61611
Target:  5'- -cUCGGCguaccGGCUGCCGCcacgGGGCgGCgGGg -3'
miRNA:   3'- gcAGCUG-----UCGGCGGCG----CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 55712 0.66 0.613171
Target:  5'- -uUgGGCGGCCacgcgugucucuauGUCGCGGGCgUGCUGc -3'
miRNA:   3'- gcAgCUGUCGG--------------CGGCGCCCG-ACGACc -5'
23573 3' -62.2 NC_005261.1 + 52523 0.66 0.610234
Target:  5'- -cUUGACGGCCGCCcgaaacgcuucccggGCcGGCUGCUc- -3'
miRNA:   3'- gcAGCUGUCGGCGG---------------CGcCCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 33458 0.66 0.60534
Target:  5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3'
miRNA:   3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.