miRNA display CGI


Results 121 - 140 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 45663 0.66 0.63572
Target:  5'- gCGggCGugAucaacGCgCGCCcCGGGCUGCUGa -3'
miRNA:   3'- -GCa-GCugU-----CG-GCGGcGCCCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 66934 0.66 0.63572
Target:  5'- gCGUCGAaGGCgGCCGCGuacaGGCcGUUGu -3'
miRNA:   3'- -GCAGCUgUCGgCGGCGC----CCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 74898 0.68 0.509418
Target:  5'- aGUCGGCGGCCcgcgcugGCCGCGcGGg-GgaGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGCGC-CCgaCgaCC- -5'
23573 3' -62.2 NC_005261.1 + 77913 0.68 0.519706
Target:  5'- gGagGugAGCCaGCUGCGGGCcgGCUa- -3'
miRNA:   3'- gCagCugUCGG-CGGCGCCCGa-CGAcc -5'
23573 3' -62.2 NC_005261.1 + 12291 0.68 0.519706
Target:  5'- aGUCcGCGuCCGCCGCGGGCacggGCg-- -3'
miRNA:   3'- gCAGcUGUcGGCGGCGCCCGa---CGacc -5'
23573 3' -62.2 NC_005261.1 + 68707 0.66 0.61611
Target:  5'- aCGaCGGCGGCgccggcccucaCGCgGCGGGCgccgGCgGGa -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGgCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 115386 0.66 0.61513
Target:  5'- gCGUCGugGucuucagcgggucGUCGaCCGCGGGCggcaGCcGGg -3'
miRNA:   3'- -GCAGCugU-------------CGGC-GGCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 91481 0.66 0.613171
Target:  5'- aG-CGGC-GCCGCCGCGGccgccGCccgccccgcgcgccUGCUGGu -3'
miRNA:   3'- gCaGCUGuCGGCGGCGCC-----CG--------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 2527 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 31752 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 77446 0.67 0.596545
Target:  5'- gGUCGuCAGCCagGCCcgggGCGcGGCUGCa-- -3'
miRNA:   3'- gCAGCuGUCGG--CGG----CGC-CCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 37184 0.67 0.586795
Target:  5'- ---gGGC-GCUGCUgGCGGcGCUGCUGGc -3'
miRNA:   3'- gcagCUGuCGGCGG-CGCC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 39876 0.67 0.577076
Target:  5'- --aCGGCcagcaGGCCGCgCGCGcGGCUgugcaGCUGGc -3'
miRNA:   3'- gcaGCUG-----UCGGCG-GCGC-CCGA-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 104277 0.67 0.567392
Target:  5'- -cUCGGCGGCUG-CGCGGGCcucGCaGGc -3'
miRNA:   3'- gcAGCUGUCGGCgGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 76149 0.67 0.567392
Target:  5'- gGUCGugGCGGCgcacgaCGCCGUGGcGCUGCa-- -3'
miRNA:   3'- gCAGC--UGUCG------GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 33352 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 31674 0.67 0.55775
Target:  5'- uG-CGGCuGGCCGCgGCGcGGCggcgGCUGa -3'
miRNA:   3'- gCaGCUG-UCGGCGgCGC-CCGa---CGACc -5'
23573 3' -62.2 NC_005261.1 + 80050 0.67 0.548155
Target:  5'- cCGUCGccacugGCGGCgGgCGCGGGggGCgUGGg -3'
miRNA:   3'- -GCAGC------UGUCGgCgGCGCCCgaCG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 38261 0.68 0.538613
Target:  5'- --aCGcCAGCCuggGCUGgGGGCgGCUGGu -3'
miRNA:   3'- gcaGCuGUCGG---CGGCgCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 67954 0.68 0.529129
Target:  5'- cCGcUCGcGCGGCCGCCGC-GGCga-UGGa -3'
miRNA:   3'- -GC-AGC-UGUCGGCGGCGcCCGacgACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.