miRNA display CGI


Results 141 - 160 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 34727 0.7 0.395637
Target:  5'- gGUCGGCgcccccuGGCgGCCGCGGGgUGgUGu -3'
miRNA:   3'- gCAGCUG-------UCGgCGGCGCCCgACgACc -5'
23573 3' -62.2 NC_005261.1 + 257 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 50868 0.68 0.509418
Target:  5'- gGUCGGC-GCCuucGCCGCGcuGGCgcugcuaUGCUGGu -3'
miRNA:   3'- gCAGCUGuCGG---CGGCGC--CCG-------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 101428 0.68 0.51035
Target:  5'- aCGUCGGCcGCCGagGCGGcGCgguccagcGCUGGc -3'
miRNA:   3'- -GCAGCUGuCGGCggCGCC-CGa-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 113285 0.68 0.519706
Target:  5'- aCGagGGCGugguccucucGCUGCCGCGGGC--CUGGg -3'
miRNA:   3'- -GCagCUGU----------CGGCGGCGCCCGacGACC- -5'
23573 3' -62.2 NC_005261.1 + 67954 0.68 0.529129
Target:  5'- cCGcUCGcGCGGCCGCCGC-GGCga-UGGa -3'
miRNA:   3'- -GC-AGC-UGUCGGCGGCGcCCGacgACC- -5'
23573 3' -62.2 NC_005261.1 + 125271 0.68 0.538613
Target:  5'- uCGUcCGGgGGCCgcuggaagucagGCCGCGGGC-GCcGGa -3'
miRNA:   3'- -GCA-GCUgUCGG------------CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 80050 0.67 0.548155
Target:  5'- cCGUCGccacugGCGGCgGgCGCGGGggGCgUGGg -3'
miRNA:   3'- -GCAGC------UGUCGgCgGCGCCCgaCG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 133787 0.67 0.55775
Target:  5'- uCGUgCGGCGcaucCCGCC-CGGGCUGCUc- -3'
miRNA:   3'- -GCA-GCUGUc---GGCGGcGCCCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 121081 0.67 0.55775
Target:  5'- gCGcCGGCGGCCGCCaGCGccuccaGGCcgUGCgGGu -3'
miRNA:   3'- -GCaGCUGUCGGCGG-CGC------CCG--ACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 127680 0.68 0.482725
Target:  5'- aCGgCGGCGGCCGCUGCcccGGCgGCgccGGa -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGc--CCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 106904 0.68 0.482725
Target:  5'- gCGUCGucCGcGCCGCgGCGcGCUGCaGGg -3'
miRNA:   3'- -GCAGCu-GU-CGGCGgCGCcCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 70860 0.7 0.412909
Target:  5'- gGUCcagGGCGGCCGCCGUGGcGUgGCcGGc -3'
miRNA:   3'- gCAG---CUGUCGGCGGCGCC-CGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 58533 0.7 0.412909
Target:  5'- -aUCGAgccCAGCCGCCGCccGGGCUcCUGc -3'
miRNA:   3'- gcAGCU---GUCGGCGGCG--CCCGAcGACc -5'
23573 3' -62.2 NC_005261.1 + 61023 0.69 0.429785
Target:  5'- cCGUCGugGGgCGgcaCCGCGGcaGCUgGCUGGu -3'
miRNA:   3'- -GCAGCugUCgGC---GGCGCC--CGA-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 29253 0.69 0.437511
Target:  5'- gCG-CGACgGGCCGCCGCcgcuggaGGGCccgcUGCUGa -3'
miRNA:   3'- -GCaGCUG-UCGGCGGCG-------CCCG----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 132889 0.69 0.44706
Target:  5'- -uUCGGCaAGCCgggcGCCGCGGGCgGCg-- -3'
miRNA:   3'- gcAGCUG-UCGG----CGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 100925 0.69 0.455841
Target:  5'- gCGUCGccuGCAGCCGCUGCaGGCccGCg-- -3'
miRNA:   3'- -GCAGC---UGUCGGCGGCGcCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 39786 0.69 0.464714
Target:  5'- aCGUCGccggggggcggcGCGGCCGCCgGCGccaGGCU-CUGGc -3'
miRNA:   3'- -GCAGC------------UGUCGGCGG-CGC---CCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 23611 0.69 0.468289
Target:  5'- uGUCGccGCcGCUGCCGgggcgcggcggggguCGGGCgGCUGGa -3'
miRNA:   3'- gCAGC--UGuCGGCGGC---------------GCCCGaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.