miRNA display CGI


Results 161 - 180 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 293 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 110317 0.7 0.404626
Target:  5'- aGUaCGGCAaccgcGCCGCCGCGGacgcGCUGCg-- -3'
miRNA:   3'- gCA-GCUGU-----CGGCGGCGCC----CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 58533 0.7 0.412909
Target:  5'- -aUCGAgccCAGCCGCCGCccGGGCUcCUGc -3'
miRNA:   3'- gcAGCU---GUCGGCGGCG--CCCGAcGACc -5'
23573 3' -62.2 NC_005261.1 + 3529 0.7 0.42468
Target:  5'- gCG-CGGCGGCCGCCucggcgcgcagcgcgGCGGGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGG---------------CGCCCGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 84359 0.69 0.438374
Target:  5'- aGUCGAaggcGCCGcCCGCGGGCUcgGCcucGGc -3'
miRNA:   3'- gCAGCUgu--CGGC-GGCGCCCGA--CGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 10508 0.69 0.44706
Target:  5'- gCG-CGGCcGCCGCUGCGGGCcccGC-GGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 97382 0.69 0.455841
Target:  5'- uGUCGccgcGCGGCUuucgcgccuGCCGCGGGCUugGCgGGc -3'
miRNA:   3'- gCAGC----UGUCGG---------CGGCGCCCGA--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 98043 0.69 0.464714
Target:  5'- gGUacUGGCGGCCGCgggcggcgggacCGCGGGCgGCgGGu -3'
miRNA:   3'- gCA--GCUGUCGGCG------------GCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 84953 0.69 0.473677
Target:  5'- -cUCGGCGGCCGCCGaggcguCGGGC-GCg-- -3'
miRNA:   3'- gcAGCUGUCGGCGGC------GCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 33599 0.7 0.388378
Target:  5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3'
miRNA:   3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 32270 0.71 0.372565
Target:  5'- aCGcCGAgGcGCCGCCGCuGG-UGCUGGa -3'
miRNA:   3'- -GCaGCUgU-CGGCGGCGcCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 63315 0.66 0.645524
Target:  5'- uGUagaGACGGUCGCCGUacgaguGGcGCUGCgaGGc -3'
miRNA:   3'- gCAg--CUGUCGGCGGCG------CC-CGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 123165 0.66 0.645524
Target:  5'- gCGg-GGCGGgCG-CGCGGGCguggugGCUGGu -3'
miRNA:   3'- -GCagCUGUCgGCgGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 40035 0.66 0.654339
Target:  5'- aGUCGACcgcgaccAGCgUGgCGaCGGGCccgUGCUGGa -3'
miRNA:   3'- gCAGCUG-------UCG-GCgGC-GCCCG---ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 121410 0.73 0.256405
Target:  5'- aGUgCGACGGCUGCCGCcgccgcuacgGGGCgGCgGGg -3'
miRNA:   3'- gCA-GCUGUCGGCGGCG----------CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 44030 0.72 0.300254
Target:  5'- ---gGGCGGCCGCCGCGcGGCgGCcgcGGg -3'
miRNA:   3'- gcagCUGUCGGCGGCGC-CCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 87788 0.72 0.313804
Target:  5'- cCGUCu-UGGCCGCCGCGuccauggccGGCgggGCUGGg -3'
miRNA:   3'- -GCAGcuGUCGGCGGCGC---------CCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 28854 0.71 0.334986
Target:  5'- cCGUCG-UGGCCGCCGCccuugaGGCUGCggcgcGGa -3'
miRNA:   3'- -GCAGCuGUCGGCGGCGc-----CCGACGa----CC- -5'
23573 3' -62.2 NC_005261.1 + 38936 0.71 0.357195
Target:  5'- aGcCGGCGGCCgggcgggccgcgGCgCGCGGGCUGCg-- -3'
miRNA:   3'- gCaGCUGUCGG------------CG-GCGCCCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 81433 0.71 0.357195
Target:  5'- gCGUCGuCGGCCGCCccgcgGCGGGCgccgccagcaGCaGGg -3'
miRNA:   3'- -GCAGCuGUCGGCGG-----CGCCCGa---------CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.