miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 55994 0.66 0.655318
Target:  5'- -aUCGGCAaCCGCgGCGGGg-GCgGGg -3'
miRNA:   3'- gcAGCUGUcGGCGgCGCCCgaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 118066 0.66 0.63572
Target:  5'- cCG-CGGCAGCgGCCGCaGccgcgcucGuCUGCUGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGGCGcC--------C-GACGACC- -5'
23573 3' -62.2 NC_005261.1 + 30370 0.66 0.63572
Target:  5'- cCGgcgCGcCGGgCGCCGCGGcGCgGgUGGa -3'
miRNA:   3'- -GCa--GCuGUCgGCGGCGCC-CGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 116916 1.1 0.000644
Target:  5'- aCGUCGACAGCCGCCGCGGGCUGCUGGa -3'
miRNA:   3'- -GCAGCUGUCGGCGGCGCCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 20855 0.66 0.655318
Target:  5'- gCGU-GGCGGCucuugCGCCGCGGGCcgGCc-- -3'
miRNA:   3'- -GCAgCUGUCG-----GCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 17179 0.66 0.655318
Target:  5'- gCGUgGGCAGCCcuGCCGC-GGCgGCg-- -3'
miRNA:   3'- -GCAgCUGUCGG--CGGCGcCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 135055 0.66 0.649443
Target:  5'- gCGgCGGCAGCgGCCcgccgcuuuccggcgGCGGGCUcGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGgCGG---------------CGCCCGA-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 75857 0.66 0.645524
Target:  5'- gCGcCGACGGCggccccgacggCGCCGUGGGC-GCg-- -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 110512 0.66 0.645524
Target:  5'- gCGUC-ACGGCCGUCGUcugcgGGGC-GCaGGa -3'
miRNA:   3'- -GCAGcUGUCGGCGGCG-----CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 75206 0.66 0.63572
Target:  5'- --aUGGCGGCCGCggugGCGGcGCUGCa-- -3'
miRNA:   3'- gcaGCUGUCGGCGg---CGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 63315 0.66 0.645524
Target:  5'- uGUagaGACGGUCGCCGUacgaguGGcGCUGCgaGGc -3'
miRNA:   3'- gCAg--CUGUCGGCGGCG------CC-CGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 102485 0.66 0.645524
Target:  5'- -cUCGGCGcGCCGCCGCgccagcgccuGGGCcuUGCgcaGGu -3'
miRNA:   3'- gcAGCUGU-CGGCGGCG----------CCCG--ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 136461 0.66 0.655318
Target:  5'- aCG-CGGCAGCCccagacucGCgCGCGGGCaGCa-- -3'
miRNA:   3'- -GCaGCUGUCGG--------CG-GCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 39324 0.66 0.645524
Target:  5'- gCGUCcaaccGC-GCCGCCGCGGccaaGCUGCgcgcGGc -3'
miRNA:   3'- -GCAGc----UGuCGGCGGCGCC----CGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 75476 0.66 0.655318
Target:  5'- cCGggCGGCGGCgcggGCCGCuacgagcgcgGGGC-GCUGGa -3'
miRNA:   3'- -GCa-GCUGUCGg---CGGCG----------CCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 123165 0.66 0.645524
Target:  5'- gCGg-GGCGGgCG-CGCGGGCguggugGCUGGu -3'
miRNA:   3'- -GCagCUGUCgGCgGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 20695 0.66 0.644544
Target:  5'- gGUUGACGGCUacaaccuGCUGaacuCGGGCcgcGCUGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGC----GCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 87405 0.66 0.63572
Target:  5'- -cUCGACGgcGCCGUCGaCGGGCgcGCcGGc -3'
miRNA:   3'- gcAGCUGU--CGGCGGC-GCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 4475 0.66 0.655318
Target:  5'- cCGUCGcGCGG-CGCCGCGGcGUagccUGCgcgGGc -3'
miRNA:   3'- -GCAGC-UGUCgGCGGCGCC-CG----ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 40035 0.66 0.654339
Target:  5'- aGUCGACcgcgaccAGCgUGgCGaCGGGCccgUGCUGGa -3'
miRNA:   3'- gCAGCUG-------UCG-GCgGC-GCCCG---ACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.