miRNA display CGI


Results 81 - 100 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 99758 0.67 0.912666
Target:  5'- gGCCAGCAcgucGGACGgGGAgaggcggcccGGGUcccagucgcggcGCGGAu -3'
miRNA:   3'- gCGGUUGU----UCUGCgCCU----------UCCA------------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 22972 0.67 0.91859
Target:  5'- gGCCGA--GGAC-CGGGAGGaggcgGCGGAg -3'
miRNA:   3'- gCGGUUguUCUGcGCCUUCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 50990 0.67 0.906495
Target:  5'- gGCCGACGGcGGCGCGu-GGGcgcgGCGGGa -3'
miRNA:   3'- gCGGUUGUU-CUGCGCcuUCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 50586 0.67 0.900079
Target:  5'- cCGCC-GCGAG-CG-GGGAGG-GCAGGg -3'
miRNA:   3'- -GCGGuUGUUCuGCgCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 115042 0.67 0.900079
Target:  5'- uGCCAGCAcccuGGCGaaGggGG-GCGGGg -3'
miRNA:   3'- gCGGUUGUu---CUGCgcCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 11072 0.67 0.899424
Target:  5'- cCGCCAGCGcgucuagGGACG-GGAcGGgGCGGGa -3'
miRNA:   3'- -GCGGUUGU-------UCUGCgCCUuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 36962 0.67 0.924266
Target:  5'- cCGCC-GCGcGGCGCaGAGcucGGUGCGGGc -3'
miRNA:   3'- -GCGGuUGUuCUGCGcCUU---CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 104156 0.67 0.924266
Target:  5'- aGCCAGCGgcGGAUGCaGGccaggcagaAGGcGUGCAGGc -3'
miRNA:   3'- gCGGUUGU--UCUGCG-CC---------UUC-CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 37290 0.67 0.924266
Target:  5'- gCGCCGu--GGACGCGGGccugcagcGGcUGCAGGc -3'
miRNA:   3'- -GCGGUuguUCUGCGCCUu-------CC-ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 29855 0.67 0.924266
Target:  5'- gCGCgGGCGcGGACGCGGGcaGGGaUGCGc- -3'
miRNA:   3'- -GCGgUUGU-UCUGCGCCU--UCC-ACGUcu -5'
23573 5' -54.1 NC_005261.1 + 35969 0.67 0.924266
Target:  5'- gGCCGACcGGGCGCuGGAGGcgagcgcGCAGc -3'
miRNA:   3'- gCGGUUGuUCUGCGcCUUCCa------CGUCu -5'
23573 5' -54.1 NC_005261.1 + 98150 0.67 0.91859
Target:  5'- uCGgCGGCAAGGcCGCGGGcggcGGGUGUguccuuGGAg -3'
miRNA:   3'- -GCgGUUGUUCU-GCGCCU----UCCACG------UCU- -5'
23573 5' -54.1 NC_005261.1 + 44036 0.67 0.91859
Target:  5'- cCGCCGcGCGgcGGcCGCGGgcGGgcaGCAGAu -3'
miRNA:   3'- -GCGGU-UGU--UCuGCGCCuuCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 91023 0.67 0.924266
Target:  5'- uGCUGAUgaAGGGCGUGGAccuGGUGCgcaAGAa -3'
miRNA:   3'- gCGGUUG--UUCUGCGCCUu--CCACG---UCU- -5'
23573 5' -54.1 NC_005261.1 + 15502 0.67 0.924266
Target:  5'- uGCgGGCGGGGCGUGuGucGGcGUGCAGGc -3'
miRNA:   3'- gCGgUUGUUCUGCGC-Cu-UC-CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 59438 0.67 0.923709
Target:  5'- aGCCGugAGagggagccccugcGGCGgGGGAGGggGCGGGg -3'
miRNA:   3'- gCGGUugUU-------------CUGCgCCUUCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 58145 0.67 0.926466
Target:  5'- cCGCCAcguagaucuucacgcGCGAGucgcuGCGCacGAGGUGCAGGc -3'
miRNA:   3'- -GCGGU---------------UGUUC-----UGCGccUUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 3354 0.68 0.86445
Target:  5'- aCGCaCAGCAGGGgccCGCGG-GGGcGCGGGc -3'
miRNA:   3'- -GCG-GUUGUUCU---GCGCCuUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 105510 0.68 0.872034
Target:  5'- aGCgGACgGAGACGgGGgcGGgggGCGGGg -3'
miRNA:   3'- gCGgUUG-UUCUGCgCCuuCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 124161 0.68 0.86368
Target:  5'- uCGCCGACGuggcccuGGACGCGGccugccUGCGGAc -3'
miRNA:   3'- -GCGGUUGU-------UCUGCGCCuucc--ACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.