miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 138140 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 137745 0.7 0.805647
Target:  5'- gGCCGAaaucGGcgcGCGCGGGggcgGGGUGCGGGg -3'
miRNA:   3'- gCGGUUgu--UC---UGCGCCU----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 137432 0.7 0.804742
Target:  5'- gCGCgCGugGGGggcggcgGCGCGGggGGgggGCGGGg -3'
miRNA:   3'- -GCG-GUugUUC-------UGCGCCuuCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 137056 0.73 0.646485
Target:  5'- cCGUCGGCA-GGCGCGGA-GGcGCGGGc -3'
miRNA:   3'- -GCGGUUGUuCUGCGCCUuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 137025 0.69 0.840415
Target:  5'- gGCCAGCAGaacGGCGuCGGugGAGG-GCGGAn -3'
miRNA:   3'- gCGGUUGUU---CUGC-GCC--UUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 136868 0.69 0.823394
Target:  5'- aCGCgGAcCAGGGCccGCGGGAgacgcuGGUGCAGGc -3'
miRNA:   3'- -GCGgUU-GUUCUG--CGCCUU------CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 136552 0.74 0.563283
Target:  5'- gGCCAGCuggugggggcagAAGGCGCGGGugggcGGGcGCAGAg -3'
miRNA:   3'- gCGGUUG------------UUCUGCGCCU-----UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 136374 0.66 0.94448
Target:  5'- aGCCGuaGCGAGACGaggugcCGGGacuGGGgGCGGAc -3'
miRNA:   3'- gCGGU--UGUUCUGC------GCCU---UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 135243 0.68 0.859794
Target:  5'- cCGCCGucuuuGCGGGcGCGCGGAuGGacaucaugcggccugUGCAGAa -3'
miRNA:   3'- -GCGGU-----UGUUC-UGCGCCUuCC---------------ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 134892 0.68 0.893421
Target:  5'- gCGCCgGGCGccgcGGCGCGGGuggAGGUGgAGGa -3'
miRNA:   3'- -GCGG-UUGUu---CUGCGCCU---UCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 133531 0.66 0.94448
Target:  5'- gGCCGAUgccaAAGACGCG-AGGGUuGgGGAu -3'
miRNA:   3'- gCGGUUG----UUCUGCGCcUUCCA-CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 132223 0.68 0.886525
Target:  5'- aCGCUcGCcGGAgcccucgcCGCGGGAGGaGCGGAg -3'
miRNA:   3'- -GCGGuUGuUCU--------GCGCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 131830 0.72 0.698357
Target:  5'- gGCCAACGc-GCGCGGGucaAGGggGCGGAa -3'
miRNA:   3'- gCGGUUGUucUGCGCCU---UCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 131759 0.67 0.906495
Target:  5'- aCGCCGGCc-GGCGCGGcGGGcGCGc- -3'
miRNA:   3'- -GCGGUUGuuCUGCGCCuUCCaCGUcu -5'
23573 5' -54.1 NC_005261.1 + 131178 0.71 0.728859
Target:  5'- gGCCAcACGcccGGACGCGGAGGGUacaCAGu -3'
miRNA:   3'- gCGGU-UGU---UCUGCGCCUUCCAc--GUCu -5'
23573 5' -54.1 NC_005261.1 + 130388 0.78 0.366359
Target:  5'- gGCCAGCAAGuaGCGCGGAGGcUGCAa- -3'
miRNA:   3'- gCGGUUGUUC--UGCGCCUUCcACGUcu -5'
23573 5' -54.1 NC_005261.1 + 129228 0.68 0.856648
Target:  5'- gGCCGGCAGGGuaUGUGGGAGGgGCu-- -3'
miRNA:   3'- gCGGUUGUUCU--GCGCCUUCCaCGucu -5'
23573 5' -54.1 NC_005261.1 + 128875 0.69 0.848634
Target:  5'- uGCCGACGAcGAgGCGGGggccGGGUG-GGAg -3'
miRNA:   3'- gCGGUUGUU-CUgCGCCU----UCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 128818 0.69 0.840415
Target:  5'- gGCCAGgaugaGGGugGgGGggGGgGCAGGc -3'
miRNA:   3'- gCGGUUg----UUCugCgCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 128250 0.69 0.814607
Target:  5'- gGCCGcgcCGAGGCGCguccGGGAGGgGCGGGc -3'
miRNA:   3'- gCGGUu--GUUCUGCG----CCUUCCaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.