miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 74702 0.66 0.948918
Target:  5'- gGCCGccGCGcGGGCGCGGAaccGGGccgcgGCAGc -3'
miRNA:   3'- gCGGU--UGU-UCUGCGCCU---UCCa----CGUCu -5'
23573 5' -54.1 NC_005261.1 + 37001 0.66 0.939799
Target:  5'- aGCCcGCGGGcuGCGCGGGgccaguuugcGGGgGCGGGa -3'
miRNA:   3'- gCGGuUGUUC--UGCGCCU----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 100589 0.66 0.939317
Target:  5'- uCGCCcAgGAGcgccgccACGCGGccgcgcAGGUGCAGGu -3'
miRNA:   3'- -GCGGuUgUUC-------UGCGCCu-----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 116952 1.09 0.00354
Target:  5'- gCGCCAACAAGACGCGGAAGGUGCAGAa -3'
miRNA:   3'- -GCGGUUGUUCUGCGCCUUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 20651 0.66 0.948918
Target:  5'- cCGCCcGCAccgccGGugGCGGcAGcG-GCAGAg -3'
miRNA:   3'- -GCGGuUGU-----UCugCGCCuUC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 93900 0.66 0.948918
Target:  5'- uCGCCAGCGacugcGGGCGCGGcgcccGCGGGc -3'
miRNA:   3'- -GCGGUUGU-----UCUGCGCCuuccaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 49252 0.66 0.94448
Target:  5'- cCGCCGcgGCGGcgucGGCGCgcacguccgcgaGGAAGGcGCAGAa -3'
miRNA:   3'- -GCGGU--UGUU----CUGCG------------CCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 136374 0.66 0.94448
Target:  5'- aGCCGuaGCGAGACGaggugcCGGGacuGGGgGCGGAc -3'
miRNA:   3'- gCGGU--UGUUCUGC------GCCU---UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 138140 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 106823 0.66 0.939799
Target:  5'- cCGCCAGCA--GCGCGu--GGUGCGc- -3'
miRNA:   3'- -GCGGUUGUucUGCGCcuuCCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 32926 0.66 0.94448
Target:  5'- gGgCGGC-GGGCGgGGggGGgGCGGGg -3'
miRNA:   3'- gCgGUUGuUCUGCgCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 29013 0.66 0.94448
Target:  5'- gGCCGAUgccaAAGACGCG-AGGGUuGgGGAu -3'
miRNA:   3'- gCGGUUG----UUCUGCGCcUUCCA-CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 68584 0.66 0.948918
Target:  5'- cCGCCGagGCGGGcCGCGGGAGcGggGCcGAc -3'
miRNA:   3'- -GCGGU--UGUUCuGCGCCUUC-Ca-CGuCU- -5'
23573 5' -54.1 NC_005261.1 + 469 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 43772 0.66 0.948918
Target:  5'- uGCuCGugGGGcggcGCGCGGAGGGcgccGCGGGu -3'
miRNA:   3'- gCG-GUugUUC----UGCGCCUUCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 68219 0.66 0.94448
Target:  5'- gGCCGACAAcggcgacccuGACgGCGGggGcGUGUucguGGAc -3'
miRNA:   3'- gCGGUUGUU----------CUG-CGCCuuC-CACG----UCU- -5'
23573 5' -54.1 NC_005261.1 + 119510 0.66 0.939799
Target:  5'- cCGCCAACAGcACGCGGccccGGUccccGCGGc -3'
miRNA:   3'- -GCGGUUGUUcUGCGCCuu--CCA----CGUCu -5'
23573 5' -54.1 NC_005261.1 + 121091 0.66 0.939317
Target:  5'- cCGCCAGCGccuccAGGCcguGCGGGuccucuaGGGcGCGGAg -3'
miRNA:   3'- -GCGGUUGU-----UCUG---CGCCU-------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 23465 0.66 0.948918
Target:  5'- gCGCCAggcccgcggcgGCGAGuGCGCGGGcccgccugggcAGGcGCGGGc -3'
miRNA:   3'- -GCGGU-----------UGUUC-UGCGCCU-----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 84286 0.66 0.948485
Target:  5'- cCGCCGGCGGccccggccccggcGGCGCcGAAGGcGUAGGu -3'
miRNA:   3'- -GCGGUUGUU-------------CUGCGcCUUCCaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.