miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 131485 0.66 0.775642
Target:  5'- aGCGCGcCGUCGacGCCUUCuUC-CGGCa -3'
miRNA:   3'- -UGUGCaGCAGC--CGGAGGcAGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 129857 0.68 0.610757
Target:  5'- cCGCGaCGUCGGCCaUCaCGauguugcUCUCGGCc -3'
miRNA:   3'- uGUGCaGCAGCCGG-AG-GC-------AGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 125254 0.7 0.505298
Target:  5'- -gGCGUCG-CGGCCcucgCUGUCUgGGUGu -3'
miRNA:   3'- ugUGCAGCaGCCGGa---GGCAGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 124987 0.66 0.729224
Target:  5'- -gACGgcgCGcCGGCCUCgGcCUCGGgGc -3'
miRNA:   3'- ugUGCa--GCaGCCGGAGgCaGAGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 124865 0.7 0.533707
Target:  5'- -gGCGUCGUC-GCCUUCGUCgucUGGCc -3'
miRNA:   3'- ugUGCAGCAGcCGGAGGCAGa--GCCGc -5'
23574 3' -59.9 NC_005261.1 + 122707 0.7 0.505298
Target:  5'- cCGCGcCGcCGGCCgcgCCGUCgauguucacgUCGGCGc -3'
miRNA:   3'- uGUGCaGCaGCCGGa--GGCAG----------AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 122608 0.66 0.748084
Target:  5'- cCGCGUUGUCGuGCCUgUG-CUugaaCGGCGa -3'
miRNA:   3'- uGUGCAGCAGC-CGGAgGCaGA----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 121534 0.66 0.775642
Target:  5'- aGCuccuCGUCGcugUCGgaGCCgCCGUCcUCGGCGa -3'
miRNA:   3'- -UGu---GCAGC---AGC--CGGaGGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 121234 0.66 0.748084
Target:  5'- cGCAUGgCGcCGGCCagcUCCGaCUCGGgGu -3'
miRNA:   3'- -UGUGCaGCaGCCGG---AGGCaGAGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 120588 0.66 0.775642
Target:  5'- -aGCGUCGU-GGCCgucgccugCgGcCUCGGCGc -3'
miRNA:   3'- ugUGCAGCAgCCGGa-------GgCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 118895 0.66 0.748084
Target:  5'- gGCGCGcUGgUGGCCUgCGUCUgggucCGGCGc -3'
miRNA:   3'- -UGUGCaGCaGCCGGAgGCAGA-----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 118609 0.66 0.766565
Target:  5'- uCGCGcUGUCGGCCguugcccuggCCGcCgCGGCGg -3'
miRNA:   3'- uGUGCaGCAGCCGGa---------GGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 118234 0.7 0.543305
Target:  5'- cCGCGgcCG-CGGCCUacgCCGUCUgCGGCGu -3'
miRNA:   3'- uGUGCa-GCaGCCGGA---GGCAGA-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 115754 1 0.005694
Target:  5'- cACACGUCGUCGGCC-CCGUCUCGGCGg -3'
miRNA:   3'- -UGUGCAGCAGCCGGaGGCAGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 115445 0.68 0.660187
Target:  5'- uCGCGcUCG-CGGCCggacuccUCCGcCUCGGUGu -3'
miRNA:   3'- uGUGC-AGCaGCCGG-------AGGCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 114907 0.75 0.282108
Target:  5'- cGCGCGcUCGUCGGCUUCUuucugCUCGGCc -3'
miRNA:   3'- -UGUGC-AGCAGCCGGAGGca---GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 109855 0.67 0.671024
Target:  5'- gGCGCGg-GUCGGCCagCCGgcuggUCGGUGg -3'
miRNA:   3'- -UGUGCagCAGCCGGa-GGCag---AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 109571 0.69 0.572412
Target:  5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3'
miRNA:   3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 109221 0.67 0.71005
Target:  5'- uCGCGUCuuuggcaUCGGCC-CCGgagUCGGCGg -3'
miRNA:   3'- uGUGCAGc------AGCCGGaGGCag-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 108582 0.67 0.713906
Target:  5'- cGCGCGaaggCGUUGGCCUCgcccacgggcaccagCGcCUCgGGCGg -3'
miRNA:   3'- -UGUGCa---GCAGCCGGAG---------------GCaGAG-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.