miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 23859 0.7 0.543305
Target:  5'- aGCACGUacuucUCGGCCaCCGaCUCGGCc -3'
miRNA:   3'- -UGUGCAgc---AGCCGGaGGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 27907 0.71 0.441793
Target:  5'- aGCGCGUCcgcggCGGCgCgguugCCGUaCUCGGCGg -3'
miRNA:   3'- -UGUGCAGca---GCCG-Ga----GGCA-GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 32722 0.67 0.680845
Target:  5'- gGCGCGcUGgu-GCaCUUCGUCUCGGCGg -3'
miRNA:   3'- -UGUGCaGCagcCG-GAGGCAGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 33707 0.67 0.719672
Target:  5'- cCugGUgG-CGGCCgCCGUCgCGGCc -3'
miRNA:   3'- uGugCAgCaGCCGGaGGCAGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 33848 0.73 0.367252
Target:  5'- gGCGCGccUC-UCGGCCUCCGgC-CGGCGg -3'
miRNA:   3'- -UGUGC--AGcAGCCGGAGGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 34460 0.66 0.775642
Target:  5'- gGCACGggcCGggGGCC-CCGUaccugCGGCGg -3'
miRNA:   3'- -UGUGCa--GCagCCGGaGGCAga---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 35006 0.67 0.680845
Target:  5'- aACACcugCGgugCGGCCggCGUCUCGGUc -3'
miRNA:   3'- -UGUGca-GCa--GCCGGagGCAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 35237 0.71 0.47756
Target:  5'- aGCGCGUgG-CGGCCgCCGUgUCGcGCGc -3'
miRNA:   3'- -UGUGCAgCaGCCGGaGGCAgAGC-CGC- -5'
23574 3' -59.9 NC_005261.1 + 36209 0.66 0.757376
Target:  5'- -gACGuUCG-CGGCCUCgGg--CGGCGg -3'
miRNA:   3'- ugUGC-AGCaGCCGGAGgCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 38377 0.69 0.592023
Target:  5'- gGCGCG-CGgCGGCCggugCCG-CUgGGCGg -3'
miRNA:   3'- -UGUGCaGCaGCCGGa---GGCaGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 39451 0.68 0.651302
Target:  5'- cGCACG-CG-CGGCCggcggCCGg--CGGCGg -3'
miRNA:   3'- -UGUGCaGCaGCCGGa----GGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 42861 0.67 0.689652
Target:  5'- aGCGCGUCGUguccgagCGcGCCUuaaacuuggCCGgCUCGGCa -3'
miRNA:   3'- -UGUGCAGCA-------GC-CGGA---------GGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 43410 0.7 0.495972
Target:  5'- -gGCGcCGggggCGGCCUCCGcCgcCGGCGg -3'
miRNA:   3'- ugUGCaGCa---GCCGGAGGCaGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 43852 0.66 0.766565
Target:  5'- -gGCGagGacgCGGCCgcgUCGUCcUCGGCGg -3'
miRNA:   3'- ugUGCagCa--GCCGGa--GGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 44022 0.67 0.690628
Target:  5'- gGCGCGgCGggCGGCCgCCG-CgCGGCGg -3'
miRNA:   3'- -UGUGCaGCa-GCCGGaGGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 44274 0.66 0.766565
Target:  5'- -gGCGUCGaCGGCCgaccgcCCGgaggCGGCGc -3'
miRNA:   3'- ugUGCAGCaGCCGGa-----GGCaga-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 47447 0.7 0.505298
Target:  5'- aGCGCG-CGcCGGCCgCCGcagcggcCUCGGCGg -3'
miRNA:   3'- -UGUGCaGCaGCCGGaGGCa------GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 47715 0.71 0.450595
Target:  5'- -gGCGUCGggGGCCUCC---UCGGCGg -3'
miRNA:   3'- ugUGCAGCagCCGGAGGcagAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 47994 0.66 0.729224
Target:  5'- aACACGgCGUCGcaGCCgCCGUCgccccgcCGGCa -3'
miRNA:   3'- -UGUGCaGCAGC--CGGaGGCAGa------GCCGc -5'
23574 3' -59.9 NC_005261.1 + 48316 0.66 0.766565
Target:  5'- gGCGCGUCGggccCGGgCUCgGgggCgcgcgCGGCGa -3'
miRNA:   3'- -UGUGCAGCa---GCCgGAGgCa--Ga----GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.