miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 69918 0.66 0.728272
Target:  5'- gGCACGUCGaagCGGCCgcagaggUCCG-CgcccgCGGCc -3'
miRNA:   3'- -UGUGCAGCa--GCCGG-------AGGCaGa----GCCGc -5'
23574 3' -59.9 NC_005261.1 + 16956 0.67 0.719672
Target:  5'- -aGCGaggcCGggCGGCCgccCCGUCUgCGGCGg -3'
miRNA:   3'- ugUGCa---GCa-GCCGGa--GGCAGA-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 33707 0.67 0.719672
Target:  5'- cCugGUgG-CGGCCgCCGUCgCGGCc -3'
miRNA:   3'- uGugCAgCaGCCGGaGGCAGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 105221 0.67 0.719672
Target:  5'- cGCGCGggcCG-CGGCCgcggCCGugaUCUgCGGCGg -3'
miRNA:   3'- -UGUGCa--GCaGCCGGa---GGC---AGA-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 86233 0.67 0.719672
Target:  5'- --uCGUCGUCGuCCUCgaaGUCggCGGCGg -3'
miRNA:   3'- uguGCAGCAGCcGGAGg--CAGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 107533 0.67 0.713906
Target:  5'- aGCGCGUCGgCGGCCaccagCaCGUCcgagagcacggcagCGGCGa -3'
miRNA:   3'- -UGUGCAGCaGCCGGa----G-GCAGa-------------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 108582 0.67 0.713906
Target:  5'- cGCGCGaaggCGUUGGCCUCgcccacgggcaccagCGcCUCgGGCGg -3'
miRNA:   3'- -UGUGCa---GCAGCCGGAG---------------GCaGAG-CCGC- -5'
23574 3' -59.9 NC_005261.1 + 4704 0.67 0.71005
Target:  5'- uCGCGUCuuuggcaUCGGCC-CCGgagUCGGCGg -3'
miRNA:   3'- uGUGCAGc------AGCCGGaGGCag-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 109221 0.67 0.71005
Target:  5'- uCGCGUCuuuggcaUCGGCC-CCGgagUCGGCGg -3'
miRNA:   3'- uGUGCAGc------AGCCGGaGGCag-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 71327 0.67 0.71005
Target:  5'- aGCACGUaGcCGGCCgcgagCgCGUCcUCGGUGa -3'
miRNA:   3'- -UGUGCAgCaGCCGGa----G-GCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 48828 0.67 0.700365
Target:  5'- gACGcCGUCGUCGGCC-CCGcCgcCGcGCa -3'
miRNA:   3'- -UGU-GCAGCAGCCGGaGGCaGa-GC-CGc -5'
23574 3' -59.9 NC_005261.1 + 87387 0.67 0.700365
Target:  5'- -gAUGUCcUCGGCCgUCGUCUcgaCGGCGc -3'
miRNA:   3'- ugUGCAGcAGCCGGaGGCAGA---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 106840 0.67 0.700365
Target:  5'- uGCGCGUCGUCcaGCCcgCCGcCUgGGgGg -3'
miRNA:   3'- -UGUGCAGCAGc-CGGa-GGCaGAgCCgC- -5'
23574 3' -59.9 NC_005261.1 + 67505 0.67 0.700365
Target:  5'- cGCGCGUaGUaGGCCagCGUCgccgCGGCGc -3'
miRNA:   3'- -UGUGCAgCAgCCGGagGCAGa---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 75552 0.67 0.690628
Target:  5'- gGCGCGUgcagcuggcggaCGUggcgcUGGCCUCCuUCUCGGUc -3'
miRNA:   3'- -UGUGCA------------GCA-----GCCGGAGGcAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 44022 0.67 0.690628
Target:  5'- gGCGCGgCGggCGGCCgCCG-CgCGGCGg -3'
miRNA:   3'- -UGUGCaGCa-GCCGGaGGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 42861 0.67 0.689652
Target:  5'- aGCGCGUCGUguccgagCGcGCCUuaaacuuggCCGgCUCGGCa -3'
miRNA:   3'- -UGUGCAGCA-------GC-CGGA---------GGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 55587 0.67 0.684763
Target:  5'- cGCGCGUgcuacgaccaccacaUGUCGGCCUCgcUGaUC-CGGCGg -3'
miRNA:   3'- -UGUGCA---------------GCAGCCGGAG--GC-AGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 32722 0.67 0.680845
Target:  5'- gGCGCGcUGgu-GCaCUUCGUCUCGGCGg -3'
miRNA:   3'- -UGUGCaGCagcCG-GAGGCAGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 69036 0.67 0.680845
Target:  5'- -gACGUCGUUGGCCg-CGUCcgcgaCGGUGc -3'
miRNA:   3'- ugUGCAGCAGCCGGagGCAGa----GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.