miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 115213 1.09 0.001322
Target:  5'- gUGCGUCCGCGGCGCGAUCGUGUCCACu -3'
miRNA:   3'- -ACGCAGGCGCCGCGCUAGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 62638 0.84 0.071706
Target:  5'- cGCGUCCGCGGCGCGcgCGaGcgCCGCg -3'
miRNA:   3'- aCGCAGGCGCCGCGCuaGCaCa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 52730 0.83 0.081725
Target:  5'- aUGCGgcgCCGCGGCGCGAUCGgggaagugGcCCGCg -3'
miRNA:   3'- -ACGCa--GGCGCCGCGCUAGCa-------CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 82128 0.79 0.147417
Target:  5'- gGCGUCCGaGGCGCGGU--UGUCCACc -3'
miRNA:   3'- aCGCAGGCgCCGCGCUAgcACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 108755 0.78 0.171211
Target:  5'- gGCGUCCGCGGCGCGc-CGcG-CCACg -3'
miRNA:   3'- aCGCAGGCGCCGCGCuaGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 63535 0.78 0.177236
Target:  5'- cGCGcCCGCGcggcggccagcucccGCGCGGUCGcGUCCGCg -3'
miRNA:   3'- aCGCaGGCGC---------------CGCGCUAGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 98263 0.78 0.178552
Target:  5'- cGCGUCagGCGGCGCGcgCGUucgacgcccggcgcGUCCGCg -3'
miRNA:   3'- aCGCAGg-CGCCGCGCuaGCA--------------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 58134 0.77 0.213323
Target:  5'- aGCcgGUaCCGCGGCGCGcgCGccgGUCCGCg -3'
miRNA:   3'- aCG--CA-GGCGCCGCGCuaGCa--CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 106872 0.76 0.227592
Target:  5'- gGCGUCCGCGGCcucgcacuccugcaGCGccugCGUcGUCCGCg -3'
miRNA:   3'- aCGCAGGCGCCG--------------CGCua--GCA-CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 72982 0.76 0.229226
Target:  5'- gGgGUCCGCGaGCGCGGccagCGcGUCCGCg -3'
miRNA:   3'- aCgCAGGCGC-CGCGCUa---GCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 57041 0.75 0.264031
Target:  5'- gGCGcCCGCaGCaCGAUCGUGUUCGCc -3'
miRNA:   3'- aCGCaGGCGcCGcGCUAGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 117504 0.75 0.276551
Target:  5'- uUGCGcCCGcCGGCGCcgccacgauGAgCGUGUCCACc -3'
miRNA:   3'- -ACGCaGGC-GCCGCG---------CUaGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 136190 0.75 0.282987
Target:  5'- cUGCGgcuggCCGCGGCGCGGcggcggcugaUCGUGaUCgACg -3'
miRNA:   3'- -ACGCa----GGCGCCGCGCU----------AGCAC-AGgUG- -5'
23575 3' -59.6 NC_005261.1 + 31673 0.75 0.282987
Target:  5'- cUGCGgcuggCCGCGGCGCGGcggcggcugaUCGUGaUCgACg -3'
miRNA:   3'- -ACGCa----GGCGCCGCGCU----------AGCAC-AGgUG- -5'
23575 3' -59.6 NC_005261.1 + 119130 0.74 0.303004
Target:  5'- cGCGgCCGCGGCGCGGccaucUCGgaUCCGCc -3'
miRNA:   3'- aCGCaGGCGCCGCGCU-----AGCacAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 74276 0.74 0.316236
Target:  5'- cGCGUCCGCGGCgggcgggGCGGUCGccgCCGg -3'
miRNA:   3'- aCGCAGGCGCCG-------CGCUAGCacaGGUg -5'
23575 3' -59.6 NC_005261.1 + 117040 0.74 0.324094
Target:  5'- aGCGUCCGCGGcCGCGcUCGcG-CCAg -3'
miRNA:   3'- aCGCAGGCGCC-GCGCuAGCaCaGGUg -5'
23575 3' -59.6 NC_005261.1 + 97613 0.73 0.331362
Target:  5'- cGUgGUCCGCGaccaGCGCGGcuUCGUGUCCGu -3'
miRNA:   3'- aCG-CAGGCGC----CGCGCU--AGCACAGGUg -5'
23575 3' -59.6 NC_005261.1 + 105223 0.73 0.346257
Target:  5'- cGCGggCCGCGGcCGCGGcCGUGaUCUGCg -3'
miRNA:   3'- aCGCa-GGCGCC-GCGCUaGCAC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 124200 0.73 0.346257
Target:  5'- cGCGUCCgGUGGCGUGAacugCGUGgcugCCAg -3'
miRNA:   3'- aCGCAGG-CGCCGCGCUa---GCACa---GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.