Results 1 - 20 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 398 | 0.66 | 0.736529 |
Target: 5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3' miRNA: 3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 657 | 0.66 | 0.736529 |
Target: 5'- cGCGUCCcCGGCGCcgaGUCcUGgcccUCCGCg -3' miRNA: 3'- aCGCAGGcGCCGCGc--UAGcAC----AGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 1316 | 0.68 | 0.597896 |
Target: 5'- aUGCG-CCGCGGC-CGcgCG-GcCCACa -3' miRNA: 3'- -ACGCaGGCGCCGcGCuaGCaCaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 1590 | 0.68 | 0.597896 |
Target: 5'- aGCgGUUgGCGGCGCGGUgGcUGgCCGCc -3' miRNA: 3'- aCG-CAGgCGCCGCGCUAgC-ACaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 3438 | 0.66 | 0.764805 |
Target: 5'- aGCGUCCagGCGG-GCGcgCGggccgCCGCg -3' miRNA: 3'- aCGCAGG--CGCCgCGCuaGCaca--GGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 3563 | 0.67 | 0.677861 |
Target: 5'- cGCGgcgCCGCuaaGGCGCGcgCGc-UCCACc -3' miRNA: 3'- aCGCa--GGCG---CCGCGCuaGCacAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 3667 | 0.66 | 0.740349 |
Target: 5'- cUGCGcagCCGCGGCGCcgcccagcaaggggcGGUCacGUCUGCg -3' miRNA: 3'- -ACGCa--GGCGCCGCG---------------CUAGcaCAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 3896 | 0.7 | 0.519399 |
Target: 5'- gGCGagCGCGGCGCGggCGc--CCGCg -3' miRNA: 3'- aCGCagGCGCCGCGCuaGCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 4216 | 0.7 | 0.529022 |
Target: 5'- gGCGU-CGCGGCGCGcgUacaccagGUCCACc -3' miRNA: 3'- aCGCAgGCGCCGCGCuaGca-----CAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 4483 | 0.71 | 0.427684 |
Target: 5'- gGCGUCgauCGCGcGCGUGG-CGuUGUCCGCg -3' miRNA: 3'- aCGCAG---GCGC-CGCGCUaGC-ACAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 5283 | 0.68 | 0.617885 |
Target: 5'- gGCcggCCGCGGUGCGcgCGgGUCCc- -3' miRNA: 3'- aCGca-GGCGCCGCGCuaGCaCAGGug -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 5650 | 0.72 | 0.385552 |
Target: 5'- gGCGUCCGCgGGCGCGccgaCGUcUUCGCa -3' miRNA: 3'- aCGCAGGCG-CCGCGCua--GCAcAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 5861 | 0.66 | 0.746053 |
Target: 5'- aGCG-CCGCGaGCGCGGcgagCGcG-CCGCg -3' miRNA: 3'- aCGCaGGCGC-CGCGCUa---GCaCaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 7441 | 0.67 | 0.70747 |
Target: 5'- cGuCGUCCGCGGUGCGGccagCGcgGggcgCCAg -3' miRNA: 3'- aC-GCAGGCGCCGCGCUa---GCa-Ca---GGUg -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 7895 | 0.7 | 0.500368 |
Target: 5'- cGCGUCCcCGaGCGCGGcCGggccGUCCAUg -3' miRNA: 3'- aCGCAGGcGC-CGCGCUaGCa---CAGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 8646 | 0.68 | 0.637915 |
Target: 5'- cGCGUgucCCGCGGCGCG--CGg--CCGCc -3' miRNA: 3'- aCGCA---GGCGCCGCGCuaGCacaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 10411 | 0.69 | 0.548457 |
Target: 5'- cGCGgCCGCGaGCGCGAgCG-GcCCGCc -3' miRNA: 3'- aCGCaGGCGC-CGCGCUaGCaCaGGUG- -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 10520 | 0.72 | 0.393757 |
Target: 5'- cUGCGggccCCGCGGCGCGcUCGcUGUCg-- -3' miRNA: 3'- -ACGCa---GGCGCCGCGCuAGC-ACAGgug -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 11227 | 0.66 | 0.746053 |
Target: 5'- cGcCGcCUGCGGCGgGGUCGgccccugacgGUCCGu -3' miRNA: 3'- aC-GCaGGCGCCGCgCUAGCa---------CAGGUg -5' |
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23575 | 3' | -59.6 | NC_005261.1 | + | 11853 | 0.7 | 0.481651 |
Target: 5'- cGCGUUCGCGaGCGCGAgCGUcagCUGCg -3' miRNA: 3'- aCGCAGGCGC-CGCGCUaGCAca-GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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