miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 398 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 657 0.66 0.736529
Target:  5'- cGCGUCCcCGGCGCcgaGUCcUGgcccUCCGCg -3'
miRNA:   3'- aCGCAGGcGCCGCGc--UAGcAC----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 1316 0.68 0.597896
Target:  5'- aUGCG-CCGCGGC-CGcgCG-GcCCACa -3'
miRNA:   3'- -ACGCaGGCGCCGcGCuaGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 1590 0.68 0.597896
Target:  5'- aGCgGUUgGCGGCGCGGUgGcUGgCCGCc -3'
miRNA:   3'- aCG-CAGgCGCCGCGCUAgC-ACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 3438 0.66 0.764805
Target:  5'- aGCGUCCagGCGG-GCGcgCGggccgCCGCg -3'
miRNA:   3'- aCGCAGG--CGCCgCGCuaGCaca--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 3563 0.67 0.677861
Target:  5'- cGCGgcgCCGCuaaGGCGCGcgCGc-UCCACc -3'
miRNA:   3'- aCGCa--GGCG---CCGCGCuaGCacAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 3667 0.66 0.740349
Target:  5'- cUGCGcagCCGCGGCGCcgcccagcaaggggcGGUCacGUCUGCg -3'
miRNA:   3'- -ACGCa--GGCGCCGCG---------------CUAGcaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 3896 0.7 0.519399
Target:  5'- gGCGagCGCGGCGCGggCGc--CCGCg -3'
miRNA:   3'- aCGCagGCGCCGCGCuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 4216 0.7 0.529022
Target:  5'- gGCGU-CGCGGCGCGcgUacaccagGUCCACc -3'
miRNA:   3'- aCGCAgGCGCCGCGCuaGca-----CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 4483 0.71 0.427684
Target:  5'- gGCGUCgauCGCGcGCGUGG-CGuUGUCCGCg -3'
miRNA:   3'- aCGCAG---GCGC-CGCGCUaGC-ACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 5283 0.68 0.617885
Target:  5'- gGCcggCCGCGGUGCGcgCGgGUCCc- -3'
miRNA:   3'- aCGca-GGCGCCGCGCuaGCaCAGGug -5'
23575 3' -59.6 NC_005261.1 + 5650 0.72 0.385552
Target:  5'- gGCGUCCGCgGGCGCGccgaCGUcUUCGCa -3'
miRNA:   3'- aCGCAGGCG-CCGCGCua--GCAcAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 5861 0.66 0.746053
Target:  5'- aGCG-CCGCGaGCGCGGcgagCGcG-CCGCg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCUa---GCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 7441 0.67 0.70747
Target:  5'- cGuCGUCCGCGGUGCGGccagCGcgGggcgCCAg -3'
miRNA:   3'- aC-GCAGGCGCCGCGCUa---GCa-Ca---GGUg -5'
23575 3' -59.6 NC_005261.1 + 7895 0.7 0.500368
Target:  5'- cGCGUCCcCGaGCGCGGcCGggccGUCCAUg -3'
miRNA:   3'- aCGCAGGcGC-CGCGCUaGCa---CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 8646 0.68 0.637915
Target:  5'- cGCGUgucCCGCGGCGCG--CGg--CCGCc -3'
miRNA:   3'- aCGCA---GGCGCCGCGCuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 10411 0.69 0.548457
Target:  5'- cGCGgCCGCGaGCGCGAgCG-GcCCGCc -3'
miRNA:   3'- aCGCaGGCGC-CGCGCUaGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 10520 0.72 0.393757
Target:  5'- cUGCGggccCCGCGGCGCGcUCGcUGUCg-- -3'
miRNA:   3'- -ACGCa---GGCGCCGCGCuAGC-ACAGgug -5'
23575 3' -59.6 NC_005261.1 + 11227 0.66 0.746053
Target:  5'- cGcCGcCUGCGGCGgGGUCGgccccugacgGUCCGu -3'
miRNA:   3'- aC-GCaGGCGCCGCgCUAGCa---------CAGGUg -5'
23575 3' -59.6 NC_005261.1 + 11853 0.7 0.481651
Target:  5'- cGCGUUCGCGaGCGCGAgCGUcagCUGCg -3'
miRNA:   3'- aCGCAGGCGC-CGCGCUaGCAca-GGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.