miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 58653 0.66 0.755481
Target:  5'- aGCGcuacuUCCGCuucGGCGCGGacuaCGUGUaCUACg -3'
miRNA:   3'- aCGC-----AGGCG---CCGCGCUa---GCACA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 134898 0.66 0.755481
Target:  5'- gGCG-CCGCGGCGCGGguggagGUGgaggaCAUg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUag----CACag---GUG- -5'
23575 3' -59.6 NC_005261.1 + 84224 0.66 0.755481
Target:  5'- aGCGcUCGCGGCgGCGccUGUGcgCCGCg -3'
miRNA:   3'- aCGCaGGCGCCG-CGCuaGCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 57578 0.66 0.755481
Target:  5'- gGCG-CCGCGuugaGCGCG-UCGaUGUgCCACc -3'
miRNA:   3'- aCGCaGGCGC----CGCGCuAGC-ACA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 133834 0.66 0.755481
Target:  5'- cGCGgCCGCGuGCGCGc-CGUGgCCGg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCuaGCACaGGUg -5'
23575 3' -59.6 NC_005261.1 + 13048 0.66 0.754543
Target:  5'- cGCGgggCCGCGcGCGCcccugccGggCGcGUCCGCc -3'
miRNA:   3'- aCGCa--GGCGC-CGCG-------CuaGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 69513 0.66 0.751722
Target:  5'- gGCGcCCGCcGCGUGAgggccggcgccgcCGUcGUCCGCg -3'
miRNA:   3'- aCGCaGGCGcCGCGCUa------------GCA-CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 75602 0.66 0.746053
Target:  5'- cGCG-CCGCGGaCGCGGacggcgucgCGUacguggacgacGUCCACc -3'
miRNA:   3'- aCGCaGGCGCC-GCGCUa--------GCA-----------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 11227 0.66 0.746053
Target:  5'- cGcCGcCUGCGGCGgGGUCGgccccugacgGUCCGu -3'
miRNA:   3'- aC-GCaGGCGCCGCgCUAGCa---------CAGGUg -5'
23575 3' -59.6 NC_005261.1 + 29746 0.66 0.746053
Target:  5'- aGCGU-CGCGGCGCG--CGUGcgcgCCGa -3'
miRNA:   3'- aCGCAgGCGCCGCGCuaGCACa---GGUg -5'
23575 3' -59.6 NC_005261.1 + 32525 0.66 0.746053
Target:  5'- cGCGgcagacgUCGCuGGCGCugguGAUCGUGggcgCCAUg -3'
miRNA:   3'- aCGCa------GGCG-CCGCG----CUAGCACa---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 53204 0.66 0.746053
Target:  5'- cGUGgCCGgGGCGCGG-CGg--CCGCg -3'
miRNA:   3'- aCGCaGGCgCCGCGCUaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 5861 0.66 0.746053
Target:  5'- aGCG-CCGCGaGCGCGGcgagCGcG-CCGCg -3'
miRNA:   3'- aCGCaGGCGC-CGCGCUa---GCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 133168 0.66 0.746053
Target:  5'- gGCGUcgccgccgacaaCCGCGGCGCcGUCGaggaGUUCAUc -3'
miRNA:   3'- aCGCA------------GGCGCCGCGcUAGCa---CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 55582 0.66 0.746053
Target:  5'- cGCaGUCCGCGGCGgCG-UCGc--CCAUg -3'
miRNA:   3'- aCG-CAGGCGCCGC-GCuAGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 118842 0.66 0.746053
Target:  5'- cGC-UCUGCGGCGCGGagggCGgcgcGcCCGCg -3'
miRNA:   3'- aCGcAGGCGCCGCGCUa---GCa---CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 85602 0.66 0.746053
Target:  5'- aGCGUCaCGgucaCGGUGCGcGUCGUGaggaagCCGCc -3'
miRNA:   3'- aCGCAG-GC----GCCGCGC-UAGCACa-----GGUG- -5'
23575 3' -59.6 NC_005261.1 + 3667 0.66 0.740349
Target:  5'- cUGCGcagCCGCGGCGCcgcccagcaaggggcGGUCacGUCUGCg -3'
miRNA:   3'- -ACGCa--GGCGCCGCG---------------CUAGcaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 12707 0.66 0.740349
Target:  5'- cUGCGg--GCGGCGCGAgCGUauaaaagccacuuggGUCUACa -3'
miRNA:   3'- -ACGCaggCGCCGCGCUaGCA---------------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 32754 0.66 0.740349
Target:  5'- gGgGcCCGCGcGCcccgaggagcugaggGCGGcCGUGUCCGCg -3'
miRNA:   3'- aCgCaGGCGC-CG---------------CGCUaGCACAGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.