Results 21 - 40 of 294 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 58653 | 0.66 | 0.755481 |
Target: 5'- aGCGcuacuUCCGCuucGGCGCGGacuaCGUGUaCUACg -3' miRNA: 3'- aCGC-----AGGCG---CCGCGCUa---GCACA-GGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 134898 | 0.66 | 0.755481 |
Target: 5'- gGCG-CCGCGGCGCGGguggagGUGgaggaCAUg -3' miRNA: 3'- aCGCaGGCGCCGCGCUag----CACag---GUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 84224 | 0.66 | 0.755481 |
Target: 5'- aGCGcUCGCGGCgGCGccUGUGcgCCGCg -3' miRNA: 3'- aCGCaGGCGCCG-CGCuaGCACa-GGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 57578 | 0.66 | 0.755481 |
Target: 5'- gGCG-CCGCGuugaGCGCG-UCGaUGUgCCACc -3' miRNA: 3'- aCGCaGGCGC----CGCGCuAGC-ACA-GGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 133834 | 0.66 | 0.755481 |
Target: 5'- cGCGgCCGCGuGCGCGc-CGUGgCCGg -3' miRNA: 3'- aCGCaGGCGC-CGCGCuaGCACaGGUg -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 13048 | 0.66 | 0.754543 |
Target: 5'- cGCGgggCCGCGcGCGCcccugccGggCGcGUCCGCc -3' miRNA: 3'- aCGCa--GGCGC-CGCG-------CuaGCaCAGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 69513 | 0.66 | 0.751722 |
Target: 5'- gGCGcCCGCcGCGUGAgggccggcgccgcCGUcGUCCGCg -3' miRNA: 3'- aCGCaGGCGcCGCGCUa------------GCA-CAGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 75602 | 0.66 | 0.746053 |
Target: 5'- cGCG-CCGCGGaCGCGGacggcgucgCGUacguggacgacGUCCACc -3' miRNA: 3'- aCGCaGGCGCC-GCGCUa--------GCA-----------CAGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 11227 | 0.66 | 0.746053 |
Target: 5'- cGcCGcCUGCGGCGgGGUCGgccccugacgGUCCGu -3' miRNA: 3'- aC-GCaGGCGCCGCgCUAGCa---------CAGGUg -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 29746 | 0.66 | 0.746053 |
Target: 5'- aGCGU-CGCGGCGCG--CGUGcgcgCCGa -3' miRNA: 3'- aCGCAgGCGCCGCGCuaGCACa---GGUg -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 32525 | 0.66 | 0.746053 |
Target: 5'- cGCGgcagacgUCGCuGGCGCugguGAUCGUGggcgCCAUg -3' miRNA: 3'- aCGCa------GGCG-CCGCG----CUAGCACa---GGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 53204 | 0.66 | 0.746053 |
Target: 5'- cGUGgCCGgGGCGCGG-CGg--CCGCg -3' miRNA: 3'- aCGCaGGCgCCGCGCUaGCacaGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 5861 | 0.66 | 0.746053 |
Target: 5'- aGCG-CCGCGaGCGCGGcgagCGcG-CCGCg -3' miRNA: 3'- aCGCaGGCGC-CGCGCUa---GCaCaGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 133168 | 0.66 | 0.746053 |
Target: 5'- gGCGUcgccgccgacaaCCGCGGCGCcGUCGaggaGUUCAUc -3' miRNA: 3'- aCGCA------------GGCGCCGCGcUAGCa---CAGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 55582 | 0.66 | 0.746053 |
Target: 5'- cGCaGUCCGCGGCGgCG-UCGc--CCAUg -3' miRNA: 3'- aCG-CAGGCGCCGC-GCuAGCacaGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 118842 | 0.66 | 0.746053 |
Target: 5'- cGC-UCUGCGGCGCGGagggCGgcgcGcCCGCg -3' miRNA: 3'- aCGcAGGCGCCGCGCUa---GCa---CaGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 85602 | 0.66 | 0.746053 |
Target: 5'- aGCGUCaCGgucaCGGUGCGcGUCGUGaggaagCCGCc -3' miRNA: 3'- aCGCAG-GC----GCCGCGC-UAGCACa-----GGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 3667 | 0.66 | 0.740349 |
Target: 5'- cUGCGcagCCGCGGCGCcgcccagcaaggggcGGUCacGUCUGCg -3' miRNA: 3'- -ACGCa--GGCGCCGCG---------------CUAGcaCAGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 12707 | 0.66 | 0.740349 |
Target: 5'- cUGCGg--GCGGCGCGAgCGUauaaaagccacuuggGUCUACa -3' miRNA: 3'- -ACGCaggCGCCGCGCUaGCA---------------CAGGUG- -5' |
|||||||
23575 | 3' | -59.6 | NC_005261.1 | + | 32754 | 0.66 | 0.740349 |
Target: 5'- gGgGcCCGCGcGCcccgaggagcugaggGCGGcCGUGUCCGCg -3' miRNA: 3'- aCgCaGGCGC-CG---------------CGCUaGCACAGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home