Results 81 - 100 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23576 | 3' | -52.6 | NC_005261.1 | + | 51487 | 0.67 | 0.950875 |
Target: 5'- cGACuGGCCGAuGAugcagGGCGCgGCGGACg-- -3' miRNA: 3'- aCUG-CCGGCU-CU-----UCGUG-UGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 48661 | 0.67 | 0.960384 |
Target: 5'- aGACGGCCGugagcuucuccaAGAGGUACgcccagucgaaguugACGAugUUg -3' miRNA: 3'- aCUGCCGGC------------UCUUCGUG---------------UGCUugAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 95323 | 0.67 | 0.958895 |
Target: 5'- cGGCGGCCccGGAGCGCcCGggUc-- -3' miRNA: 3'- aCUGCCGGcuCUUCGUGuGCuuGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 57769 | 0.67 | 0.957754 |
Target: 5'- aGGCGGaCGAGAuGCuGCGCGAcgagagccgcgguaACUUCc -3' miRNA: 3'- aCUGCCgGCUCUuCG-UGUGCU--------------UGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 56348 | 0.67 | 0.954199 |
Target: 5'- cUGGCGGCCGcaGGggGCGgguggguggugaGCG-ACUUCc -3' miRNA: 3'- -ACUGCCGGC--UCuuCGUg-----------UGCuUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 19882 | 0.67 | 0.955006 |
Target: 5'- --cCGGCCGAGAGGC-CGagGAGCa-- -3' miRNA: 3'- acuGCCGGCUCUUCGuGUg-CUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 15537 | 0.67 | 0.955006 |
Target: 5'- cGGCGGCgCGGcgauGGAGCAgGCGcAGCUg- -3' miRNA: 3'- aCUGCCG-GCU----CUUCGUgUGC-UUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 33290 | 0.67 | 0.955006 |
Target: 5'- -cGCGGCgGAGcuuGGCGCGCGcGCggCa -3' miRNA: 3'- acUGCCGgCUCu--UCGUGUGCuUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 101532 | 0.67 | 0.950875 |
Target: 5'- cGGCGGUcagcgCGGGggGC-CGagGGACUUCa -3' miRNA: 3'- aCUGCCG-----GCUCuuCGuGUg-CUUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 32006 | 0.67 | 0.950875 |
Target: 5'- cGGCGGCCGcgccaGGcGGC-CGCGGGCg-- -3' miRNA: 3'- aCUGCCGGC-----UCuUCGuGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 9397 | 0.67 | 0.950875 |
Target: 5'- gUGGCGGCC-AGc--CGCGCGAGCgUCa -3' miRNA: 3'- -ACUGCCGGcUCuucGUGUGCUUGaAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 43777 | 0.67 | 0.941871 |
Target: 5'- cGAC-GCgGAGggGgACGCGGACg-- -3' miRNA: 3'- aCUGcCGgCUCuuCgUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 79015 | 0.67 | 0.941871 |
Target: 5'- cGGCGGCacuaCGAGAcgGGCGa--GGGCUUCg -3' miRNA: 3'- aCUGCCG----GCUCU--UCGUgugCUUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 97095 | 0.67 | 0.945136 |
Target: 5'- cGGCGGCUGgcgcgcgccacgcaGGAAGCGCuCGGGCc-- -3' miRNA: 3'- aCUGCCGGC--------------UCUUCGUGuGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 127523 | 0.67 | 0.946498 |
Target: 5'- gGGgGGCCcGGAGGCGgccCGCGAACg-- -3' miRNA: 3'- aCUgCCGGcUCUUCGU---GUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 31131 | 0.67 | 0.946498 |
Target: 5'- -cGCGGCUG-GggGCGCuguuCGAcugccACUUCg -3' miRNA: 3'- acUGCCGGCuCuuCGUGu---GCU-----UGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 31519 | 0.67 | 0.946498 |
Target: 5'- gGugGGCCGcuuccuGcAGCGCugGGACg-- -3' miRNA: 3'- aCugCCGGCu-----CuUCGUGugCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 83174 | 0.67 | 0.958895 |
Target: 5'- cGGCGGCCGAGcucgccGGCccCGCGcAGCUg- -3' miRNA: 3'- aCUGCCGGCUCu-----UCGu-GUGC-UUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 78707 | 0.67 | 0.950875 |
Target: 5'- gUGGCGGCgGGGcugcuccaGGGCGCGCGuGCg-- -3' miRNA: 3'- -ACUGCCGgCUC--------UUCGUGUGCuUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 98631 | 0.67 | 0.955006 |
Target: 5'- gGGCGGC--GGggGCGCGCGGcGCUc- -3' miRNA: 3'- aCUGCCGgcUCuuCGUGUGCU-UGAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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