miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 4906 0.67 0.958895
Target:  5'- -cGCGuGCCGgcAGGAGCuGCGCGAGCa-- -3'
miRNA:   3'- acUGC-CGGC--UCUUCG-UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 6426 0.67 0.958895
Target:  5'- cGGCGcGCCGucAGGCGCgGCGGGCg-- -3'
miRNA:   3'- aCUGC-CGGCucUUCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 8078 0.67 0.958895
Target:  5'- cUGACGGUgGAGGAcgugguGCGCucgGCGGACggCg -3'
miRNA:   3'- -ACUGCCGgCUCUU------CGUG---UGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 38320 0.67 0.958895
Target:  5'- --cUGGCCGAGgcGCuCGCGGGCc-- -3'
miRNA:   3'- acuGCCGGCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 49461 0.67 0.958895
Target:  5'- cGGCcagGGCCGAGGAGCGCAgCGc----- -3'
miRNA:   3'- aCUG---CCGGCUCUUCGUGU-GCuugaag -5'
23576 3' -52.6 NC_005261.1 + 83174 0.67 0.958895
Target:  5'- cGGCGGCCGAGcucgccGGCccCGCGcAGCUg- -3'
miRNA:   3'- aCUGCCGGCUCu-----UCGu-GUGC-UUGAag -5'
23576 3' -52.6 NC_005261.1 + 95323 0.67 0.958895
Target:  5'- cGGCGGCCccGGAGCGCcCGggUc-- -3'
miRNA:   3'- aCUGCCGGcuCUUCGUGuGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 19882 0.67 0.955006
Target:  5'- --cCGGCCGAGAGGC-CGagGAGCa-- -3'
miRNA:   3'- acuGCCGGCUCUUCGuGUg-CUUGaag -5'
23576 3' -52.6 NC_005261.1 + 15537 0.67 0.955006
Target:  5'- cGGCGGCgCGGcgauGGAGCAgGCGcAGCUg- -3'
miRNA:   3'- aCUGCCG-GCU----CUUCGUgUGC-UUGAag -5'
23576 3' -52.6 NC_005261.1 + 33290 0.67 0.955006
Target:  5'- -cGCGGCgGAGcuuGGCGCGCGcGCggCa -3'
miRNA:   3'- acUGCCGgCUCu--UCGUGUGCuUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 78707 0.67 0.950875
Target:  5'- gUGGCGGCgGGGcugcuccaGGGCGCGCGuGCg-- -3'
miRNA:   3'- -ACUGCCGgCUC--------UUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 32006 0.67 0.950875
Target:  5'- cGGCGGCCGcgccaGGcGGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGC-----UCuUCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 101532 0.67 0.950875
Target:  5'- cGGCGGUcagcgCGGGggGC-CGagGGACUUCa -3'
miRNA:   3'- aCUGCCG-----GCUCuuCGuGUg-CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 103504 0.67 0.950875
Target:  5'- -cGCGGCCGccaGGggGCGC-CGAccGCUg- -3'
miRNA:   3'- acUGCCGGC---UCuuCGUGuGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 51487 0.67 0.950875
Target:  5'- cGACuGGCCGAuGAugcagGGCGCgGCGGACg-- -3'
miRNA:   3'- aCUG-CCGGCU-CU-----UCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 50452 0.67 0.952557
Target:  5'- cGGCGGCCaaGAcGGugacccucgcgccagGGCcCGCGGGCUUCg -3'
miRNA:   3'- aCUGCCGG--CU-CU---------------UCGuGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 56348 0.67 0.954199
Target:  5'- cUGGCGGCCGcaGGggGCGgguggguggugaGCG-ACUUCc -3'
miRNA:   3'- -ACUGCCGGC--UCuuCGUg-----------UGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 37416 0.67 0.955006
Target:  5'- gGGCGGCgcAGgcGCACGCGccCUUCc -3'
miRNA:   3'- aCUGCCGgcUCuuCGUGUGCuuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 98631 0.67 0.955006
Target:  5'- gGGCGGC--GGggGCGCGCGGcGCUc- -3'
miRNA:   3'- aCUGCCGgcUCuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 48661 0.67 0.960384
Target:  5'- aGACGGCCGugagcuucuccaAGAGGUACgcccagucgaaguugACGAugUUg -3'
miRNA:   3'- aCUGCCGGC------------UCUUCGUG---------------UGCUugAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.