miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 50452 0.67 0.952557
Target:  5'- cGGCGGCCaaGAcGGugacccucgcgccagGGCcCGCGGGCUUCg -3'
miRNA:   3'- aCUGCCGG--CU-CU---------------UCGuGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 51487 0.67 0.950875
Target:  5'- cGACuGGCCGAuGAugcagGGCGCgGCGGACg-- -3'
miRNA:   3'- aCUG-CCGGCU-CU-----UCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 56348 0.67 0.954199
Target:  5'- cUGGCGGCCGcaGGggGCGgguggguggugaGCG-ACUUCc -3'
miRNA:   3'- -ACUGCCGGC--UCuuCGUg-----------UGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 83174 0.67 0.958895
Target:  5'- cGGCGGCCGAGcucgccGGCccCGCGcAGCUg- -3'
miRNA:   3'- aCUGCCGGCUCu-----UCGu-GUGC-UUGAag -5'
23576 3' -52.6 NC_005261.1 + 95323 0.67 0.958895
Target:  5'- cGGCGGCCccGGAGCGCcCGggUc-- -3'
miRNA:   3'- aCUGCCGGcuCUUCGUGuGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 60192 0.67 0.955006
Target:  5'- -cGCGGCgGAGAAguccGCGCGCGcGCUc- -3'
miRNA:   3'- acUGCCGgCUCUU----CGUGUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 68090 0.67 0.955006
Target:  5'- cGGgGGCgGGGAGGCcgugaaguucggGCugGAGCUg- -3'
miRNA:   3'- aCUgCCGgCUCUUCG------------UGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 48347 0.67 0.955006
Target:  5'- cGGCgaGGCCGAGGAGCcgGCuccACUUCg -3'
miRNA:   3'- aCUG--CCGGCUCUUCGugUGcu-UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 28762 0.67 0.958517
Target:  5'- -cGCGGCCGGGGgcgccugGGCcgcgGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCUCU-------UCG----UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 132062 0.67 0.958895
Target:  5'- gUGGCGGCCGAGGu---CGCGGccGCcgUCg -3'
miRNA:   3'- -ACUGCCGGCUCUucguGUGCU--UGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 136826 0.67 0.958895
Target:  5'- aGACGGCgcccccgcgCGuGAGGUagaGCAUGAACUUg -3'
miRNA:   3'- aCUGCCG---------GCuCUUCG---UGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 38278 0.67 0.958895
Target:  5'- gGGCGGCUGGu--GCACGCGGuGCUg- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 75481 0.67 0.958895
Target:  5'- cGGCGGCgCGGGccGC-UACGAGCg-- -3'
miRNA:   3'- aCUGCCG-GCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 97198 0.67 0.958895
Target:  5'- -cGCGGCCG-GAAGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 75829 0.67 0.958895
Target:  5'- -cGCGGCCgcgcccgggGAGggGCGCGCGGc---- -3'
miRNA:   3'- acUGCCGG---------CUCuuCGUGUGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 128889 0.67 0.958895
Target:  5'- cGGgGGCCGGGuGGgAgGCGGGCgUCg -3'
miRNA:   3'- aCUgCCGGCUCuUCgUgUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 49461 0.67 0.958895
Target:  5'- cGGCcagGGCCGAGGAGCGCAgCGc----- -3'
miRNA:   3'- aCUG---CCGGCUCUUCGUGU-GCuugaag -5'
23576 3' -52.6 NC_005261.1 + 101532 0.67 0.950875
Target:  5'- cGGCGGUcagcgCGGGggGC-CGagGGACUUCa -3'
miRNA:   3'- aCUGCCG-----GCUCuuCGuGUg-CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 48661 0.67 0.960384
Target:  5'- aGACGGCCGugagcuucuccaAGAGGUACgcccagucgaaguugACGAugUUg -3'
miRNA:   3'- aCUGCCGGC------------UCUUCGUG---------------UGCUugAAg -5'
23576 3' -52.6 NC_005261.1 + 103504 0.67 0.950875
Target:  5'- -cGCGGCCGccaGGggGCGC-CGAccGCUg- -3'
miRNA:   3'- acUGCCGGC---UCuuCGUGuGCU--UGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.