miRNA display CGI


Results 141 - 160 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 13674 0.67 0.941871
Target:  5'- gGGgGGgCGcGggGCGCGCGGGCg-- -3'
miRNA:   3'- aCUgCCgGCuCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 70718 0.67 0.941871
Target:  5'- -cACGGCCGAGAgcacguccAGCACGugcgccuccuCGAGCa-- -3'
miRNA:   3'- acUGCCGGCUCU--------UCGUGU----------GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 103869 0.67 0.941871
Target:  5'- cGGCGGCgGGGcGGCGCcgcCGGGCggCg -3'
miRNA:   3'- aCUGCCGgCUCuUCGUGu--GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 128146 0.67 0.941871
Target:  5'- cGACGGUCGccGggGC-CGCGGGCc-- -3'
miRNA:   3'- aCUGCCGGCu-CuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 38278 0.67 0.958895
Target:  5'- gGGCGGCUGGu--GCACGCGGuGCUg- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 23005 0.67 0.946498
Target:  5'- gGGgGGCCcGGAGGCGgccCGCGAACg-- -3'
miRNA:   3'- aCUgCCGGcUCUUCGU---GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 117369 0.67 0.946046
Target:  5'- ---aGGCCGcccuccuGGAGGCGCGCu-GCUUCg -3'
miRNA:   3'- acugCCGGC-------UCUUCGUGUGcuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 72775 0.67 0.941871
Target:  5'- cGGCGGCCGcgcacgcguccGggGC-CGCGGACa-- -3'
miRNA:   3'- aCUGCCGGCu----------CuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 19616 0.68 0.936992
Target:  5'- cGGCGGCCaGGGcaacGGCcgacaGCGCGAGCUcCg -3'
miRNA:   3'- aCUGCCGGcUCU----UCG-----UGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 44640 0.68 0.936992
Target:  5'- cGACGG-CGAGGucgccgAGCGCGCGAucGCgUCc -3'
miRNA:   3'- aCUGCCgGCUCU------UCGUGUGCU--UGaAG- -5'
23576 3' -52.6 NC_005261.1 + 45197 0.68 0.936992
Target:  5'- cGAgGGCCGcGu-GUGCGCGGGCUUg -3'
miRNA:   3'- aCUgCCGGCuCuuCGUGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 110342 0.68 0.936992
Target:  5'- cGGCGGCCGAu--GCGCGcCGggUUa- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGU-GCuuGAag -5'
23576 3' -52.6 NC_005261.1 + 35549 0.68 0.936992
Target:  5'- cGACGGCCGcGgcGgACGCGGcGCUg- -3'
miRNA:   3'- aCUGCCGGCuCuuCgUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 59651 0.68 0.935479
Target:  5'- cGAuuCGGCCGGGcGaacucggcggucccGGCGCGCGAGCggaUCg -3'
miRNA:   3'- aCU--GCCGGCUC-U--------------UCGUGUGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 85086 0.68 0.93186
Target:  5'- cGGCGGCgCGAcGgcGCGCGCGuACg-- -3'
miRNA:   3'- aCUGCCG-GCU-CuuCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 109395 0.68 0.93186
Target:  5'- cGACGGCCGccucAGC-CGCGGccgccucgGCUUCg -3'
miRNA:   3'- aCUGCCGGCucu-UCGuGUGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 22468 0.68 0.93186
Target:  5'- cGACGccGCCGAGAcggaGGCcgacgacguguGCGCGAACcUCu -3'
miRNA:   3'- aCUGC--CGGCUCU----UCG-----------UGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 14528 0.68 0.93186
Target:  5'- cUGAUGGCCGAGuacgcGGCccACGCuGAGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCu----UCG--UGUG-CUUGaag -5'
23576 3' -52.6 NC_005261.1 + 17651 0.68 0.931333
Target:  5'- cGACGGCCacGAcGCugACGAugacgggGCUUCc -3'
miRNA:   3'- aCUGCCGGcuCUuCGugUGCU-------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 11692 0.68 0.936992
Target:  5'- cGGCGGCgCGuggccGAGGCGCgGCGGGCg-- -3'
miRNA:   3'- aCUGCCG-GCu----CUUCGUG-UGCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.