Results 81 - 100 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23576 | 3' | -52.6 | NC_005261.1 | + | 17736 | 0.71 | 0.789035 |
Target: 5'- -aGCGGCgCucGGAGCGgGCGGACUUCu -3' miRNA: 3'- acUGCCG-GcuCUUCGUgUGCUUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 39376 | 0.71 | 0.792796 |
Target: 5'- cGGCGGCCGGGGAGgGCGgcccuggcggcgaccCGAGCc-- -3' miRNA: 3'- aCUGCCGGCUCUUCgUGU---------------GCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 8949 | 0.71 | 0.798391 |
Target: 5'- gGGCGGgCGGGGcGGCGCGgGGGCUUg -3' miRNA: 3'- aCUGCCgGCUCU-UCGUGUgCUUGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 27665 | 0.71 | 0.82546 |
Target: 5'- cGugGGCCGuGGAGCGCGgGuguGCg-- -3' miRNA: 3'- aCugCCGGCuCUUCGUGUgCu--UGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 82318 | 0.71 | 0.82546 |
Target: 5'- cGGCGGCUGcggcuggaAGAAGCACaccggagggagGCGAuCUUCa -3' miRNA: 3'- aCUGCCGGC--------UCUUCGUG-----------UGCUuGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 83400 | 0.71 | 0.82546 |
Target: 5'- --uCGGCCGAGGcgagcaGGUGCGCGAaguugagcuGCUUCa -3' miRNA: 3'- acuGCCGGCUCU------UCGUGUGCU---------UGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 105278 | 0.71 | 0.82546 |
Target: 5'- gGGCGGCagcgccggCGAGcccGGGCGCGCGAGCg-- -3' miRNA: 3'- aCUGCCG--------GCUC---UUCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 67094 | 0.71 | 0.824584 |
Target: 5'- gGGCGGCgcuUGAGAgcgucguGGCGCGCGGGCg-- -3' miRNA: 3'- aCUGCCG---GCUCU-------UCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 18340 | 0.71 | 0.816613 |
Target: 5'- ---aGGCCGGGgcGCAgCACGAGCgacgUCc -3' miRNA: 3'- acugCCGGCUCuuCGU-GUGCUUGa---AG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 123160 | 0.71 | 0.798391 |
Target: 5'- cGAgGGCgGGGcGGGCGCGCGGGCg-- -3' miRNA: 3'- aCUgCCGgCUC-UUCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 55790 | 0.7 | 0.858891 |
Target: 5'- cGGCGGCgCGGGGccGGCcggggGCGCGGACggCg -3' miRNA: 3'- aCUGCCG-GCUCU--UCG-----UGUGCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 130634 | 0.7 | 0.858891 |
Target: 5'- -aGCGGCCGGGuAAGCAgGCGcGCg-- -3' miRNA: 3'- acUGCCGGCUC-UUCGUgUGCuUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 21534 | 0.7 | 0.850843 |
Target: 5'- cUGGCGGCCGAugagcGAGGCGCucGCGAu---- -3' miRNA: 3'- -ACUGCCGGCU-----CUUCGUG--UGCUugaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 79115 | 0.7 | 0.850843 |
Target: 5'- cGGUGGCCGGGGAGCuCGCGcGCg-- -3' miRNA: 3'- aCUGCCGGCUCUUCGuGUGCuUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 13963 | 0.7 | 0.850843 |
Target: 5'- -cGCGGCCG---GGCGCGCGGGCggCg -3' miRNA: 3'- acUGCCGGCucuUCGUGUGCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 24975 | 0.7 | 0.842583 |
Target: 5'- cGaACGGCaUGAGcccGCGCGCGAACUUg -3' miRNA: 3'- aC-UGCCG-GCUCuu-CGUGUGCUUGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 134711 | 0.7 | 0.842583 |
Target: 5'- aGGCGGCCGcc--GCGCugGAGCg-- -3' miRNA: 3'- aCUGCCGGCucuuCGUGugCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 33899 | 0.7 | 0.858891 |
Target: 5'- cGACGGCCGgccgcuGGAcGCGCGCGuccGCgcgUCu -3' miRNA: 3'- aCUGCCGGC------UCUuCGUGUGCu--UGa--AG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 83765 | 0.7 | 0.850843 |
Target: 5'- -cACGGCCGGGucgcAGCGCcCGAGCa-- -3' miRNA: 3'- acUGCCGGCUCu---UCGUGuGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 118287 | 0.7 | 0.83412 |
Target: 5'- gUGACGGCCGccgcGGGCACcgggGCGcACUUCc -3' miRNA: 3'- -ACUGCCGGCuc--UUCGUG----UGCuUGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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