miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 34870 0.69 0.881699
Target:  5'- -cGCGGCCGAGcugggggagcGGCGCGCgGAGCUg- -3'
miRNA:   3'- acUGCCGGCUCu---------UCGUGUG-CUUGAag -5'
23576 3' -52.6 NC_005261.1 + 36306 0.69 0.888133
Target:  5'- gUGGCGuucuaccGCCG-GggGCACGCGGcUUUCg -3'
miRNA:   3'- -ACUGC-------CGGCuCuuCGUGUGCUuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 53822 0.69 0.895732
Target:  5'- -cGCGGCCGAcauGCuGCGCGAGCUg- -3'
miRNA:   3'- acUGCCGGCUcuuCG-UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 36432 0.69 0.904973
Target:  5'- gUGACGuacgugcgcagccccGCCGAGGcGGCACGCGcGCUg- -3'
miRNA:   3'- -ACUGC---------------CGGCUCU-UCGUGUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 55435 0.69 0.908784
Target:  5'- aGGUGGCCGcggcGGAGCugGCGcuCUUCg -3'
miRNA:   3'- aCUGCCGGCu---CUUCGugUGCuuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 76519 0.69 0.908784
Target:  5'- gGAUGG--GGGggGCACACGGGCg-- -3'
miRNA:   3'- aCUGCCggCUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 34180 0.69 0.908784
Target:  5'- -cGCGGCCGAGgcGC-UGCGGcaguACUUCc -3'
miRNA:   3'- acUGCCGGCUCuuCGuGUGCU----UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 71553 0.69 0.908784
Target:  5'- cGAUcGCCGccGAGGCGCugGGGCUgcUCg -3'
miRNA:   3'- aCUGcCGGCu-CUUCGUGugCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 30193 0.69 0.872823
Target:  5'- aGGCGGCCGccgcgcuGGAGGCggccgcgcuggcgGCGCGAACc-- -3'
miRNA:   3'- aCUGCCGGC-------UCUUCG-------------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 65092 0.69 0.911274
Target:  5'- cUGGCGGCgCGAGcccGGCccggggaccgcgcggACGCGGGCUUUc -3'
miRNA:   3'- -ACUGCCG-GCUCu--UCG---------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 127692 0.69 0.895732
Target:  5'- aGGCGcGCCG-GggGCGacaGCGAGCg-- -3'
miRNA:   3'- aCUGC-CGGCuCuuCGUg--UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 37351 0.69 0.902382
Target:  5'- -cGCGuaCGAGggGCuGCGCGcGCUUCu -3'
miRNA:   3'- acUGCcgGCUCuuCG-UGUGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 9845 0.69 0.888836
Target:  5'- -uGCGGCgCGAgGAAGCG-AUGGACUUCu -3'
miRNA:   3'- acUGCCG-GCU-CUUCGUgUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 47100 0.69 0.888836
Target:  5'- -cACGGCUGAGGccucggccgcGGCGCGCGAGaCggcgUCg -3'
miRNA:   3'- acUGCCGGCUCU----------UCGUGUGCUU-Ga---AG- -5'
23576 3' -52.6 NC_005261.1 + 77705 0.69 0.888836
Target:  5'- gGACGGCCucGggGCGgAUGAAgUUg -3'
miRNA:   3'- aCUGCCGGcuCuuCGUgUGCUUgAAg -5'
23576 3' -52.6 NC_005261.1 + 28483 0.69 0.895732
Target:  5'- cGGCGGCCGGGAGcCGCAUucGCa-- -3'
miRNA:   3'- aCUGCCGGCUCUUcGUGUGcuUGaag -5'
23576 3' -52.6 NC_005261.1 + 35242 0.69 0.895732
Target:  5'- gUGGCGGCCGccguGucGCGCGCGGcgGCg-- -3'
miRNA:   3'- -ACUGCCGGCu---CuuCGUGUGCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 53287 0.69 0.895732
Target:  5'- cGGCGGCCGccgaGGAGGUgcuGCGCGAGg--- -3'
miRNA:   3'- aCUGCCGGC----UCUUCG---UGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 64692 0.69 0.895732
Target:  5'- cGAUGGCguacuGGCGCACGAugUUCc -3'
miRNA:   3'- aCUGCCGgcucuUCGUGUGCUugAAG- -5'
23576 3' -52.6 NC_005261.1 + 88999 0.69 0.895732
Target:  5'- cGGCGGCCGAccuGCGCGCGcugGGCg-- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGC---UUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.