miRNA display CGI


Results 141 - 160 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 76519 0.69 0.908784
Target:  5'- gGAUGG--GGGggGCACACGGGCg-- -3'
miRNA:   3'- aCUGCCggCUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 65092 0.69 0.911274
Target:  5'- cUGGCGGCgCGAGcccGGCccggggaccgcgcggACGCGGGCUUUc -3'
miRNA:   3'- -ACUGCCG-GCUCu--UCG---------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 71553 0.69 0.908784
Target:  5'- cGAUcGCCGccGAGGCGCugGGGCUgcUCg -3'
miRNA:   3'- aCUGcCGGCu-CUUCGUGugCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 28483 0.69 0.895732
Target:  5'- cGGCGGCCGGGAGcCGCAUucGCa-- -3'
miRNA:   3'- aCUGCCGGCUCUUcGUGUGcuUGaag -5'
23576 3' -52.6 NC_005261.1 + 34180 0.69 0.908784
Target:  5'- -cGCGGCCGAGgcGC-UGCGGcaguACUUCc -3'
miRNA:   3'- acUGCCGGCUCuuCGuGUGCU----UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 125214 0.69 0.874326
Target:  5'- cGugGuGCUGGGggGCGCGCucGGGCUc- -3'
miRNA:   3'- aCugC-CGGCUCuuCGUGUG--CUUGAag -5'
23576 3' -52.6 NC_005261.1 + 14099 0.69 0.874326
Target:  5'- -cGCGGUCGucGAGGCAgACGGGCgUCg -3'
miRNA:   3'- acUGCCGGCu-CUUCGUgUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 46875 0.69 0.874326
Target:  5'- aGAaGGCCGAGAAGU---CGAACUUg -3'
miRNA:   3'- aCUgCCGGCUCUUCGuguGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 128455 0.69 0.874326
Target:  5'- cGGCGGUCGc-GAGCACgACGAGCa-- -3'
miRNA:   3'- aCUGCCGGCucUUCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 131879 0.69 0.874326
Target:  5'- cUGGCGGCCGccGccGCACGCGAcgGCg-- -3'
miRNA:   3'- -ACUGCCGGCu-CuuCGUGUGCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 100865 0.69 0.874326
Target:  5'- cGAaGGCCGccAGAAGCGCGCGcAGCcccUCg -3'
miRNA:   3'- aCUgCCGGC--UCUUCGUGUGC-UUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 98004 0.69 0.881699
Target:  5'- aGGCGGCgGGGgcGCugGCGGcgagGCUg- -3'
miRNA:   3'- aCUGCCGgCUCuuCGugUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 29924 0.69 0.881699
Target:  5'- cGGCGGCCGucuGGGAcccguGCAgGCGAGCg-- -3'
miRNA:   3'- aCUGCCGGC---UCUU-----CGUgUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 55138 0.69 0.881699
Target:  5'- cGGCGGCgCuGGAGGCGCugGAAg--- -3'
miRNA:   3'- aCUGCCG-GcUCUUCGUGugCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 34870 0.69 0.881699
Target:  5'- -cGCGGCCGAGcugggggagcGGCGCGCgGAGCUg- -3'
miRNA:   3'- acUGCCGGCUCu---------UCGUGUG-CUUGAag -5'
23576 3' -52.6 NC_005261.1 + 9845 0.69 0.888836
Target:  5'- -uGCGGCgCGAgGAAGCG-AUGGACUUCu -3'
miRNA:   3'- acUGCCG-GCU-CUUCGUgUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 47100 0.69 0.888836
Target:  5'- -cACGGCUGAGGccucggccgcGGCGCGCGAGaCggcgUCg -3'
miRNA:   3'- acUGCCGGCUCU----------UCGUGUGCUU-Ga---AG- -5'
23576 3' -52.6 NC_005261.1 + 77705 0.69 0.888836
Target:  5'- gGACGGCCucGggGCGgAUGAAgUUg -3'
miRNA:   3'- aCUGCCGGcuCuuCGUgUGCUUgAAg -5'
23576 3' -52.6 NC_005261.1 + 110342 0.68 0.936992
Target:  5'- cGGCGGCCGAu--GCGCGcCGggUUa- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGU-GCuuGAag -5'
23576 3' -52.6 NC_005261.1 + 66369 0.68 0.914934
Target:  5'- gGGCGGaCCGcaAGcGGCGCgagcgccacgugGCGGACUUCg -3'
miRNA:   3'- aCUGCC-GGC--UCuUCGUG------------UGCUUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.