miRNA display CGI


Results 161 - 180 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 57403 0.68 0.926473
Target:  5'- cGACGGaCGAGguGUACACGGcGCUg- -3'
miRNA:   3'- aCUGCCgGCUCuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 19616 0.68 0.936992
Target:  5'- cGGCGGCCaGGGcaacGGCcgacaGCGCGAGCUcCg -3'
miRNA:   3'- aCUGCCGGcUCU----UCG-----UGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 35549 0.68 0.936992
Target:  5'- cGACGGCCGcGgcGgACGCGGcGCUg- -3'
miRNA:   3'- aCUGCCGGCuCuuCgUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 44640 0.68 0.936992
Target:  5'- cGACGG-CGAGGucgccgAGCGCGCGAucGCgUCc -3'
miRNA:   3'- aCUGCCgGCUCU------UCGUGUGCU--UGaAG- -5'
23576 3' -52.6 NC_005261.1 + 45197 0.68 0.936992
Target:  5'- cGAgGGCCGcGu-GUGCGCGGGCUUg -3'
miRNA:   3'- aCUgCCGGCuCuuCGUGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 110342 0.68 0.936992
Target:  5'- cGGCGGCCGAu--GCGCGcCGggUUa- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGU-GCuuGAag -5'
23576 3' -52.6 NC_005261.1 + 85086 0.68 0.93186
Target:  5'- cGGCGGCgCGAcGgcGCGCGCGuACg-- -3'
miRNA:   3'- aCUGCCG-GCU-CuuCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 109395 0.68 0.93186
Target:  5'- cGACGGCCGccucAGC-CGCGGccgccucgGCUUCg -3'
miRNA:   3'- aCUGCCGGCucu-UCGuGUGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 22468 0.68 0.93186
Target:  5'- cGACGccGCCGAGAcggaGGCcgacgacguguGCGCGAACcUCu -3'
miRNA:   3'- aCUGC--CGGCUCU----UCG-----------UGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 26931 0.68 0.914934
Target:  5'- cGGCGGCgGAGGcAGCGCgGCGGAaggCg -3'
miRNA:   3'- aCUGCCGgCUCU-UCGUG-UGCUUgaaG- -5'
23576 3' -52.6 NC_005261.1 + 87256 0.68 0.914934
Target:  5'- cGuCGGCCGAGAGGUuuCGCGcGCcguagUCg -3'
miRNA:   3'- aCuGCCGGCUCUUCGu-GUGCuUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 25268 0.68 0.920831
Target:  5'- gUGGCGGCCGccguGGAcAGCGCgGCGAAg-UCg -3'
miRNA:   3'- -ACUGCCGGC----UCU-UCGUG-UGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 95292 0.68 0.914934
Target:  5'- cUGAUGGCCagcuGGgcGCAgACGGACUg- -3'
miRNA:   3'- -ACUGCCGGc---UCuuCGUgUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 19361 0.68 0.920831
Target:  5'- cGGUGGCCGAGGccagGGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCU----UCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 76636 0.68 0.920831
Target:  5'- gGugGG-CGGGAGGCugccCACGAACa-- -3'
miRNA:   3'- aCugCCgGCUCUUCGu---GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 86804 0.68 0.92592
Target:  5'- cGGCGcGcCCGGGGcccagcaggggugGGCGCGCGGGCUcCg -3'
miRNA:   3'- aCUGC-C-GGCUCU-------------UCGUGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 34698 0.68 0.926473
Target:  5'- cGGgGGCCGAgGAGGCGgcggaugcCGCGGACg-- -3'
miRNA:   3'- aCUgCCGGCU-CUUCGU--------GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 68167 0.68 0.929736
Target:  5'- cGGUGGCCGGGgcGCuggucgcgggugcCACGAugUUCg -3'
miRNA:   3'- aCUGCCGGCUCuuCGu------------GUGCUugAAG- -5'
23576 3' -52.6 NC_005261.1 + 17651 0.68 0.931333
Target:  5'- cGACGGCCacGAcGCugACGAugacgggGCUUCc -3'
miRNA:   3'- aCUGCCGGcuCUuCGugUGCU-------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 14528 0.68 0.93186
Target:  5'- cUGAUGGCCGAGuacgcGGCccACGCuGAGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCu----UCG--UGUG-CUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.