miRNA display CGI


Results 81 - 100 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 91024 0.71 0.807587
Target:  5'- cGGCGG-CGAGGAGCGCGacuacuGCUUCc -3'
miRNA:   3'- aCUGCCgGCUCUUCGUGUgcu---UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 18340 0.71 0.816613
Target:  5'- ---aGGCCGGGgcGCAgCACGAGCgacgUCc -3'
miRNA:   3'- acugCCGGCUCuuCGU-GUGCUUGa---AG- -5'
23576 3' -52.6 NC_005261.1 + 48028 0.71 0.816613
Target:  5'- aGAgcaGGgCGAGGAGCACGCGcGCgcggUCg -3'
miRNA:   3'- aCUg--CCgGCUCUUCGUGUGCuUGa---AG- -5'
23576 3' -52.6 NC_005261.1 + 30834 0.71 0.816613
Target:  5'- cUGGCGGCCGGGcucuGGCcguucguggACGCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCu---UCG---------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 67094 0.71 0.824584
Target:  5'- gGGCGGCgcuUGAGAgcgucguGGCGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCG---GCUCU-------UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 83400 0.71 0.82546
Target:  5'- --uCGGCCGAGGcgagcaGGUGCGCGAaguugagcuGCUUCa -3'
miRNA:   3'- acuGCCGGCUCU------UCGUGUGCU---------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 82318 0.71 0.82546
Target:  5'- cGGCGGCUGcggcuggaAGAAGCACaccggagggagGCGAuCUUCa -3'
miRNA:   3'- aCUGCCGGC--------UCUUCGUG-----------UGCUuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 44412 0.71 0.82546
Target:  5'- cGGCGGCUGcGGcgguggcggcGGCGCGCGGGCggCg -3'
miRNA:   3'- aCUGCCGGCuCU----------UCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 27665 0.71 0.82546
Target:  5'- cGugGGCCGuGGAGCGCGgGuguGCg-- -3'
miRNA:   3'- aCugCCGGCuCUUCGUGUgCu--UGaag -5'
23576 3' -52.6 NC_005261.1 + 105278 0.71 0.82546
Target:  5'- gGGCGGCagcgccggCGAGcccGGGCGCGCGAGCg-- -3'
miRNA:   3'- aCUGCCG--------GCUC---UUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 84878 0.7 0.833262
Target:  5'- cGGCGGCCGA-AAGCGCggcggggGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUcUUCGUG-------UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 118287 0.7 0.83412
Target:  5'- gUGACGGCCGccgcGGGCACcgggGCGcACUUCc -3'
miRNA:   3'- -ACUGCCGGCuc--UUCGUG----UGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 24975 0.7 0.842583
Target:  5'- cGaACGGCaUGAGcccGCGCGCGAACUUg -3'
miRNA:   3'- aC-UGCCG-GCUCuu-CGUGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 134711 0.7 0.842583
Target:  5'- aGGCGGCCGcc--GCGCugGAGCg-- -3'
miRNA:   3'- aCUGCCGGCucuuCGUGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 2490 0.7 0.842583
Target:  5'- -cGCGGCUGAGGcgcgccAGCAuCACGAACa-- -3'
miRNA:   3'- acUGCCGGCUCU------UCGU-GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 13963 0.7 0.850843
Target:  5'- -cGCGGCCG---GGCGCGCGGGCggCg -3'
miRNA:   3'- acUGCCGGCucuUCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 79115 0.7 0.850843
Target:  5'- cGGUGGCCGGGGAGCuCGCGcGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUUCGuGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 83765 0.7 0.850843
Target:  5'- -cACGGCCGGGucgcAGCGCcCGAGCa-- -3'
miRNA:   3'- acUGCCGGCUCu---UCGUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 60263 0.7 0.850843
Target:  5'- cGGCGGCCGugaAGAGGCGCcCGGGg--- -3'
miRNA:   3'- aCUGCCGGC---UCUUCGUGuGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 21534 0.7 0.850843
Target:  5'- cUGGCGGCCGAugagcGAGGCGCucGCGAu---- -3'
miRNA:   3'- -ACUGCCGGCU-----CUUCGUG--UGCUugaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.