miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 130634 0.7 0.858891
Target:  5'- -aGCGGCCGGGuAAGCAgGCGcGCg-- -3'
miRNA:   3'- acUGCCGGCUC-UUCGUgUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 55790 0.7 0.858891
Target:  5'- cGGCGGCgCGGGGccGGCcggggGCGCGGACggCg -3'
miRNA:   3'- aCUGCCG-GCUCU--UCG-----UGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 33899 0.7 0.858891
Target:  5'- cGACGGCCGgccgcuGGAcGCGCGCGuccGCgcgUCu -3'
miRNA:   3'- aCUGCCGGC------UCUuCGUGUGCu--UGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 26116 0.7 0.858891
Target:  5'- -aGCGGCCGGGuAAGCAgGCGcGCg-- -3'
miRNA:   3'- acUGCCGGCUC-UUCGUgUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 68112 0.7 0.866721
Target:  5'- cUGGCcuuuGCCGGgcacGAGGCGC-CGAGCUUCu -3'
miRNA:   3'- -ACUGc---CGGCU----CUUCGUGuGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 77144 0.7 0.866721
Target:  5'- cGGCGGCCGAGcuGCcCGUGAGCg-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 20318 0.7 0.866721
Target:  5'- cGACuGGgccCCGAGccGCGCACGAGCg-- -3'
miRNA:   3'- aCUG-CC---GGCUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 94276 0.7 0.866721
Target:  5'- cGGCGGCCGuGucguccagguacGAGCGCACGGuCUcCg -3'
miRNA:   3'- aCUGCCGGCuC------------UUCGUGUGCUuGAaG- -5'
23576 3' -52.6 NC_005261.1 + 70039 0.7 0.866721
Target:  5'- cGGCGGCgggggCGAGGGggcccgcggcGCGCGCGAGCUcCg -3'
miRNA:   3'- aCUGCCG-----GCUCUU----------CGUGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 38148 0.7 0.866721
Target:  5'- cGGCGGCggCGAGggGCGCGgcgcgccccCGGGCggCg -3'
miRNA:   3'- aCUGCCG--GCUCuuCGUGU---------GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 26586 0.7 0.866721
Target:  5'- gGAgGGCUGGGAGGCgGCgGCGGGCggCg -3'
miRNA:   3'- aCUgCCGGCUCUUCG-UG-UGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 30193 0.69 0.872823
Target:  5'- aGGCGGCCGccgcgcuGGAGGCggccgcgcuggcgGCGCGAACc-- -3'
miRNA:   3'- aCUGCCGGC-------UCUUCG-------------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 125214 0.69 0.874326
Target:  5'- cGugGuGCUGGGggGCGCGCucGGGCUc- -3'
miRNA:   3'- aCugC-CGGCUCuuCGUGUG--CUUGAag -5'
23576 3' -52.6 NC_005261.1 + 36352 0.69 0.874326
Target:  5'- -cGCGGCUGGGcgcccuGCGCGCGGACg-- -3'
miRNA:   3'- acUGCCGGCUCuu----CGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 128455 0.69 0.874326
Target:  5'- cGGCGGUCGc-GAGCACgACGAGCa-- -3'
miRNA:   3'- aCUGCCGGCucUUCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 100865 0.69 0.874326
Target:  5'- cGAaGGCCGccAGAAGCGCGCGcAGCcccUCg -3'
miRNA:   3'- aCUgCCGGC--UCUUCGUGUGC-UUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 82620 0.69 0.874326
Target:  5'- gGACGcGCUgcuggaccagGAGGAGCGCAUGGGCg-- -3'
miRNA:   3'- aCUGC-CGG----------CUCUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 34100 0.69 0.874326
Target:  5'- cUGGCGGCCGAGcucGCG-GCGAACcgCg -3'
miRNA:   3'- -ACUGCCGGCUCuu-CGUgUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 46875 0.69 0.874326
Target:  5'- aGAaGGCCGAGAAGU---CGAACUUg -3'
miRNA:   3'- aCUgCCGGCUCUUCGuguGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 14099 0.69 0.874326
Target:  5'- -cGCGGUCGucGAGGCAgACGGGCgUCg -3'
miRNA:   3'- acUGCCGGCu-CUUCGUgUGCUUGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.