Results 121 - 140 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23576 | 3' | -52.6 | NC_005261.1 | + | 46875 | 0.69 | 0.874326 |
Target: 5'- aGAaGGCCGAGAAGU---CGAACUUg -3' miRNA: 3'- aCUgCCGGCUCUUCGuguGCUUGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 131879 | 0.69 | 0.874326 |
Target: 5'- cUGGCGGCCGccGccGCACGCGAcgGCg-- -3' miRNA: 3'- -ACUGCCGGCu-CuuCGUGUGCU--UGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 128455 | 0.69 | 0.874326 |
Target: 5'- cGGCGGUCGc-GAGCACgACGAGCa-- -3' miRNA: 3'- aCUGCCGGCucUUCGUG-UGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 15687 | 0.69 | 0.874326 |
Target: 5'- -uGCGGUgGAGAAGUACAUGuACUa- -3' miRNA: 3'- acUGCCGgCUCUUCGUGUGCuUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 34870 | 0.69 | 0.881699 |
Target: 5'- -cGCGGCCGAGcugggggagcGGCGCGCgGAGCUg- -3' miRNA: 3'- acUGCCGGCUCu---------UCGUGUG-CUUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 28804 | 0.69 | 0.881699 |
Target: 5'- cGGCGGUCGGGuuucGGUGCGCGggUgcgCg -3' miRNA: 3'- aCUGCCGGCUCu---UCGUGUGCuuGaa-G- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 29924 | 0.69 | 0.881699 |
Target: 5'- cGGCGGCCGucuGGGAcccguGCAgGCGAGCg-- -3' miRNA: 3'- aCUGCCGGC---UCUU-----CGUgUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 104388 | 0.69 | 0.881699 |
Target: 5'- gGA-GGCCGAGAGGCGCGCc------ -3' miRNA: 3'- aCUgCCGGCUCUUCGUGUGcuugaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 55138 | 0.69 | 0.881699 |
Target: 5'- cGGCGGCgCuGGAGGCGCugGAAg--- -3' miRNA: 3'- aCUGCCG-GcUCUUCGUGugCUUgaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 98004 | 0.69 | 0.881699 |
Target: 5'- aGGCGGCgGGGgcGCugGCGGcgagGCUg- -3' miRNA: 3'- aCUGCCGgCUCuuCGugUGCU----UGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 36306 | 0.69 | 0.888133 |
Target: 5'- gUGGCGuucuaccGCCG-GggGCACGCGGcUUUCg -3' miRNA: 3'- -ACUGC-------CGGCuCuuCGUGUGCUuGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 77705 | 0.69 | 0.888836 |
Target: 5'- gGACGGCCucGggGCGgAUGAAgUUg -3' miRNA: 3'- aCUGCCGGcuCuuCGUgUGCUUgAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 73305 | 0.69 | 0.888836 |
Target: 5'- aGGCGGCCaGGggGUgccggucaaACACGAGggUCa -3' miRNA: 3'- aCUGCCGGcUCuuCG---------UGUGCUUgaAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 17483 | 0.69 | 0.888836 |
Target: 5'- gGGCGcGCCGGGggGUccuagacgcggaGCAUGGGCUc- -3' miRNA: 3'- aCUGC-CGGCUCuuCG------------UGUGCUUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 47100 | 0.69 | 0.888836 |
Target: 5'- -cACGGCUGAGGccucggccgcGGCGCGCGAGaCggcgUCg -3' miRNA: 3'- acUGCCGGCUCU----------UCGUGUGCUU-Ga---AG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 9845 | 0.69 | 0.888836 |
Target: 5'- -uGCGGCgCGAgGAAGCG-AUGGACUUCu -3' miRNA: 3'- acUGCCG-GCU-CUUCGUgUGCUUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 18971 | 0.69 | 0.895732 |
Target: 5'- gUGGCGG-UGGGgcGCGCACGAAagUCa -3' miRNA: 3'- -ACUGCCgGCUCuuCGUGUGCUUgaAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 70971 | 0.69 | 0.895732 |
Target: 5'- cGACGGCgaagaaGAGcgcguGGCGCGCGGGCg-- -3' miRNA: 3'- aCUGCCGg-----CUCu----UCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 35242 | 0.69 | 0.895732 |
Target: 5'- gUGGCGGCCGccguGucGCGCGCGGcgGCg-- -3' miRNA: 3'- -ACUGCCGGCu---CuuCGUGUGCU--UGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 53287 | 0.69 | 0.895732 |
Target: 5'- cGGCGGCCGccgaGGAGGUgcuGCGCGAGg--- -3' miRNA: 3'- aCUGCCGGC----UCUUCG---UGUGCUUgaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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