miRNA display CGI


Results 141 - 160 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 70971 0.69 0.895732
Target:  5'- cGACGGCgaagaaGAGcgcguGGCGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGg-----CUCu----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 127692 0.69 0.895732
Target:  5'- aGGCGcGCCG-GggGCGacaGCGAGCg-- -3'
miRNA:   3'- aCUGC-CGGCuCuuCGUg--UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 88999 0.69 0.895732
Target:  5'- cGGCGGCCGAccuGCGCGCGcugGGCg-- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGC---UUGaag -5'
23576 3' -52.6 NC_005261.1 + 64692 0.69 0.895732
Target:  5'- cGAUGGCguacuGGCGCACGAugUUCc -3'
miRNA:   3'- aCUGCCGgcucuUCGUGUGCUugAAG- -5'
23576 3' -52.6 NC_005261.1 + 28483 0.69 0.895732
Target:  5'- cGGCGGCCGGGAGcCGCAUucGCa-- -3'
miRNA:   3'- aCUGCCGGCUCUUcGUGUGcuUGaag -5'
23576 3' -52.6 NC_005261.1 + 35242 0.69 0.895732
Target:  5'- gUGGCGGCCGccguGucGCGCGCGGcgGCg-- -3'
miRNA:   3'- -ACUGCCGGCu---CuuCGUGUGCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 13122 0.69 0.902382
Target:  5'- cGGCGGCCGcGggGCGCGUGugg-UCg -3'
miRNA:   3'- aCUGCCGGCuCuuCGUGUGCuugaAG- -5'
23576 3' -52.6 NC_005261.1 + 66324 0.69 0.902382
Target:  5'- aGGCGGCCGuGcAGCcCACGAGg-UCu -3'
miRNA:   3'- aCUGCCGGCuCuUCGuGUGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 37351 0.69 0.902382
Target:  5'- -cGCGuaCGAGggGCuGCGCGcGCUUCu -3'
miRNA:   3'- acUGCcgGCUCuuCG-UGUGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 36432 0.69 0.904973
Target:  5'- gUGACGuacgugcgcagccccGCCGAGGcGGCACGCGcGCUg- -3'
miRNA:   3'- -ACUGC---------------CGGCUCU-UCGUGUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 121637 0.69 0.908784
Target:  5'- cGGCGGCCGccgccGGCgaGCGCGGGCUg- -3'
miRNA:   3'- aCUGCCGGCucu--UCG--UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 34180 0.69 0.908784
Target:  5'- -cGCGGCCGAGgcGC-UGCGGcaguACUUCc -3'
miRNA:   3'- acUGCCGGCUCuuCGuGUGCU----UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 71553 0.69 0.908784
Target:  5'- cGAUcGCCGccGAGGCGCugGGGCUgcUCg -3'
miRNA:   3'- aCUGcCGGCu-CUUCGUGugCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 76519 0.69 0.908784
Target:  5'- gGAUGG--GGGggGCACACGGGCg-- -3'
miRNA:   3'- aCUGCCggCUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 36635 0.69 0.908784
Target:  5'- -aACGGCgCGAagccGGCGCGCGGGCUUg -3'
miRNA:   3'- acUGCCG-GCUcu--UCGUGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 55435 0.69 0.908784
Target:  5'- aGGUGGCCGcggcGGAGCugGCGcuCUUCg -3'
miRNA:   3'- aCUGCCGGCu---CUUCGugUGCuuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 34195 0.69 0.908784
Target:  5'- gGAgGGCCG-GAGGCAgACGGcGCgUCg -3'
miRNA:   3'- aCUgCCGGCuCUUCGUgUGCU-UGaAG- -5'
23576 3' -52.6 NC_005261.1 + 65092 0.69 0.911274
Target:  5'- cUGGCGGCgCGAGcccGGCccggggaccgcgcggACGCGGGCUUUc -3'
miRNA:   3'- -ACUGCCG-GCUCu--UCG---------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 87256 0.68 0.914934
Target:  5'- cGuCGGCCGAGAGGUuuCGCGcGCcguagUCg -3'
miRNA:   3'- aCuGCCGGCUCUUCGu-GUGCuUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 66369 0.68 0.914934
Target:  5'- gGGCGGaCCGcaAGcGGCGCgagcgccacgugGCGGACUUCg -3'
miRNA:   3'- aCUGCC-GGC--UCuUCGUG------------UGCUUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.