miRNA display CGI


Results 81 - 100 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 75829 0.67 0.958895
Target:  5'- -cGCGGCCgcgcccgggGAGggGCGCGCGGc---- -3'
miRNA:   3'- acUGCCGG---------CUCuuCGUGUGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 38320 0.67 0.958895
Target:  5'- --cUGGCCGAGgcGCuCGCGGGCc-- -3'
miRNA:   3'- acuGCCGGCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 4906 0.67 0.958895
Target:  5'- -cGCGuGCCGgcAGGAGCuGCGCGAGCa-- -3'
miRNA:   3'- acUGC-CGGC--UCUUCG-UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 6426 0.67 0.958895
Target:  5'- cGGCGcGCCGucAGGCGCgGCGGGCg-- -3'
miRNA:   3'- aCUGC-CGGCucUUCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 128889 0.67 0.958895
Target:  5'- cGGgGGCCGGGuGGgAgGCGGGCgUCg -3'
miRNA:   3'- aCUgCCGGCUCuUCgUgUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 8078 0.67 0.958895
Target:  5'- cUGACGGUgGAGGAcgugguGCGCucgGCGGACggCg -3'
miRNA:   3'- -ACUGCCGgCUCUU------CGUG---UGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 49461 0.67 0.958895
Target:  5'- cGGCcagGGCCGAGGAGCGCAgCGc----- -3'
miRNA:   3'- aCUG---CCGGCUCUUCGUGU-GCuugaag -5'
23576 3' -52.6 NC_005261.1 + 83174 0.67 0.958895
Target:  5'- cGGCGGCCGAGcucgccGGCccCGCGcAGCUg- -3'
miRNA:   3'- aCUGCCGGCUCu-----UCGu-GUGC-UUGAag -5'
23576 3' -52.6 NC_005261.1 + 133279 0.67 0.958517
Target:  5'- -cGCGGCCGGGGgcgccugGGCcgcgGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCUCU-------UCG----UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 28762 0.67 0.958517
Target:  5'- -cGCGGCCGGGGgcgccugGGCcgcgGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCUCU-------UCG----UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 57769 0.67 0.957754
Target:  5'- aGGCGGaCGAGAuGCuGCGCGAcgagagccgcgguaACUUCc -3'
miRNA:   3'- aCUGCCgGCUCUuCG-UGUGCU--------------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 52318 0.67 0.956591
Target:  5'- aGcACGGUCGAGcAGGCcaccgaggcguucguGCGCGGGCUggUCg -3'
miRNA:   3'- aC-UGCCGGCUC-UUCG---------------UGUGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 68090 0.67 0.955006
Target:  5'- cGGgGGCgGGGAGGCcgugaaguucggGCugGAGCUg- -3'
miRNA:   3'- aCUgCCGgCUCUUCG------------UGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 48347 0.67 0.955006
Target:  5'- cGGCgaGGCCGAGGAGCcgGCuccACUUCg -3'
miRNA:   3'- aCUG--CCGGCUCUUCGugUGcu-UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 60192 0.67 0.955006
Target:  5'- -cGCGGCgGAGAAguccGCGCGCGcGCUc- -3'
miRNA:   3'- acUGCCGgCUCUU----CGUGUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 37416 0.67 0.955006
Target:  5'- gGGCGGCgcAGgcGCACGCGccCUUCc -3'
miRNA:   3'- aCUGCCGgcUCuuCGUGUGCuuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 98631 0.67 0.955006
Target:  5'- gGGCGGC--GGggGCGCGCGGcGCUc- -3'
miRNA:   3'- aCUGCCGgcUCuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 33290 0.67 0.955006
Target:  5'- -cGCGGCgGAGcuuGGCGCGCGcGCggCa -3'
miRNA:   3'- acUGCCGgCUCu--UCGUGUGCuUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 15537 0.67 0.955006
Target:  5'- cGGCGGCgCGGcgauGGAGCAgGCGcAGCUg- -3'
miRNA:   3'- aCUGCCG-GCU----CUUCGUgUGC-UUGAag -5'
23576 3' -52.6 NC_005261.1 + 19882 0.67 0.955006
Target:  5'- --cCGGCCGAGAGGC-CGagGAGCa-- -3'
miRNA:   3'- acuGCCGGCUCUUCGuGUg-CUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.