miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 19882 0.67 0.955006
Target:  5'- --cCGGCCGAGAGGC-CGagGAGCa-- -3'
miRNA:   3'- acuGCCGGCUCUUCGuGUg-CUUGaag -5'
23576 3' -52.6 NC_005261.1 + 48347 0.67 0.955006
Target:  5'- cGGCgaGGCCGAGGAGCcgGCuccACUUCg -3'
miRNA:   3'- aCUG--CCGGCUCUUCGugUGcu-UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 85449 0.67 0.955006
Target:  5'- uUGGCGccgcccGCCGAGAAcauCACGCGGuuCUUCa -3'
miRNA:   3'- -ACUGC------CGGCUCUUc--GUGUGCUu-GAAG- -5'
23576 3' -52.6 NC_005261.1 + 82993 0.67 0.955006
Target:  5'- aGGCGGCCGccucGCGCACcGAGCcgccgUCg -3'
miRNA:   3'- aCUGCCGGCucuuCGUGUG-CUUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 56348 0.67 0.954199
Target:  5'- cUGGCGGCCGcaGGggGCGgguggguggugaGCG-ACUUCc -3'
miRNA:   3'- -ACUGCCGGC--UCuuCGUg-----------UGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 50452 0.67 0.952557
Target:  5'- cGGCGGCCaaGAcGGugacccucgcgccagGGCcCGCGGGCUUCg -3'
miRNA:   3'- aCUGCCGG--CU-CU---------------UCGuGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 34349 0.67 0.950875
Target:  5'- gGGCGGCCGAcGggGCcgggcgccGCGCGGcgccGCg-- -3'
miRNA:   3'- aCUGCCGGCU-CuuCG--------UGUGCU----UGaag -5'
23576 3' -52.6 NC_005261.1 + 101532 0.67 0.950875
Target:  5'- cGGCGGUcagcgCGGGggGC-CGagGGACUUCa -3'
miRNA:   3'- aCUGCCG-----GCUCuuCGuGUg-CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 32006 0.67 0.950875
Target:  5'- cGGCGGCCGcgccaGGcGGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGC-----UCuUCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 78707 0.67 0.950875
Target:  5'- gUGGCGGCgGGGcugcuccaGGGCGCGCGuGCg-- -3'
miRNA:   3'- -ACUGCCGgCUC--------UUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 9397 0.67 0.950875
Target:  5'- gUGGCGGCC-AGc--CGCGCGAGCgUCa -3'
miRNA:   3'- -ACUGCCGGcUCuucGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 128069 0.67 0.950875
Target:  5'- aUGGCGGgCGGGcGGGCGaGCGAGCg-- -3'
miRNA:   3'- -ACUGCCgGCUC-UUCGUgUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 103504 0.67 0.950875
Target:  5'- -cGCGGCCGccaGGggGCGC-CGAccGCUg- -3'
miRNA:   3'- acUGCCGGC---UCuuCGUGuGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 125747 0.67 0.950875
Target:  5'- aGGgGGCCGGGGccagGGCugcCGCGGGCUc- -3'
miRNA:   3'- aCUgCCGGCUCU----UCGu--GUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 89607 0.67 0.950875
Target:  5'- cGACGGCuaCGGGAAGCugaacCGCGGcggcguCUUCc -3'
miRNA:   3'- aCUGCCG--GCUCUUCGu----GUGCUu-----GAAG- -5'
23576 3' -52.6 NC_005261.1 + 51487 0.67 0.950875
Target:  5'- cGACuGGCCGAuGAugcagGGCGCgGCGGACg-- -3'
miRNA:   3'- aCUG-CCGGCU-CU-----UCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 46752 0.67 0.950448
Target:  5'- cGGCGGCCGcggcggcgccgcuGGGAG-GCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGC-------------UCUUCgUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 127383 0.67 0.950448
Target:  5'- uUGGCGGCggCGAGGAgcccggcgcccucGCACACGAGg--- -3'
miRNA:   3'- -ACUGCCG--GCUCUU-------------CGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 44174 0.67 0.950448
Target:  5'- cGACcuGGCCGAcAAGCuccgcgccagcgaGCGCGAGCUg- -3'
miRNA:   3'- aCUG--CCGGCUcUUCG-------------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 58358 0.67 0.949588
Target:  5'- cUGugGGCCGAGGcGGCcaagcucaaccccaGCGCGGcgGCUa- -3'
miRNA:   3'- -ACugCCGGCUCU-UCG--------------UGUGCU--UGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.