miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 31131 0.67 0.946498
Target:  5'- -cGCGGCUG-GggGCGCuguuCGAcugccACUUCg -3'
miRNA:   3'- acUGCCGGCuCuuCGUGu---GCU-----UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 31519 0.67 0.946498
Target:  5'- gGugGGCCGcuuccuGcAGCGCugGGACg-- -3'
miRNA:   3'- aCugCCGGCu-----CuUCGUGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 75060 0.67 0.946498
Target:  5'- gGGCGuGUCGcGGAGCACGuCGGACa-- -3'
miRNA:   3'- aCUGC-CGGCuCUUCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 69950 0.67 0.946498
Target:  5'- -cGCGGCCGGGGccccGcCGCGCGGGCg-- -3'
miRNA:   3'- acUGCCGGCUCUu---C-GUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 103124 0.67 0.946498
Target:  5'- cGGCGGCUGGGggGCuCGCc-GCUc- -3'
miRNA:   3'- aCUGCCGGCUCuuCGuGUGcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 122855 0.67 0.946498
Target:  5'- cGGCGgcGCCGAG-GGCGC-CGAGCg-- -3'
miRNA:   3'- aCUGC--CGGCUCuUCGUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 127523 0.67 0.946498
Target:  5'- gGGgGGCCcGGAGGCGgccCGCGAACg-- -3'
miRNA:   3'- aCUgCCGGcUCUUCGU---GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 75851 0.67 0.946498
Target:  5'- cGACGgugccgcuGCCGc-AGGCGCGCGAGCUg- -3'
miRNA:   3'- aCUGC--------CGGCucUUCGUGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 49753 0.67 0.946498
Target:  5'- cGACGGUgaugaccgucgUGuAGAucAGCACGCGGACgUCg -3'
miRNA:   3'- aCUGCCG-----------GC-UCU--UCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 12772 0.67 0.946498
Target:  5'- cGGCGGUggCGGGggGCucgucgGCGAGCUcgUCg -3'
miRNA:   3'- aCUGCCG--GCUCuuCGug----UGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 129582 0.67 0.946498
Target:  5'- aGGCGGCCGcgcgccgcGGGA-CACGCGGcaAUUUCg -3'
miRNA:   3'- aCUGCCGGC--------UCUUcGUGUGCU--UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 23005 0.67 0.946498
Target:  5'- gGGgGGCCcGGAGGCGgccCGCGAACg-- -3'
miRNA:   3'- aCUgCCGGcUCUUCGU---GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 117369 0.67 0.946046
Target:  5'- ---aGGCCGcccuccuGGAGGCGCGCu-GCUUCg -3'
miRNA:   3'- acugCCGGC-------UCUUCGUGUGcuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 97095 0.67 0.945136
Target:  5'- cGGCGGCUGgcgcgcgccacgcaGGAAGCGCuCGGGCc-- -3'
miRNA:   3'- aCUGCCGGC--------------UCUUCGUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 72775 0.67 0.941871
Target:  5'- cGGCGGCCGcgcacgcguccGggGC-CGCGGACa-- -3'
miRNA:   3'- aCUGCCGGCu----------CuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 79015 0.67 0.941871
Target:  5'- cGGCGGCacuaCGAGAcgGGCGa--GGGCUUCg -3'
miRNA:   3'- aCUGCCG----GCUCU--UCGUgugCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 30418 0.67 0.941871
Target:  5'- cGGCGGCCGcuAGGGccgccGCGCGCGAGg--- -3'
miRNA:   3'- aCUGCCGGC--UCUU-----CGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 61258 0.67 0.941871
Target:  5'- cGGCGGaaGGGGGcCACACaGGCUUCg -3'
miRNA:   3'- aCUGCCggCUCUUcGUGUGcUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 43777 0.67 0.941871
Target:  5'- cGAC-GCgGAGggGgACGCGGACg-- -3'
miRNA:   3'- aCUGcCGgCUCuuCgUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 59300 0.67 0.941871
Target:  5'- cGGCGGUCGAGcGGCAa--GAGCa-- -3'
miRNA:   3'- aCUGCCGGCUCuUCGUgugCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.