miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 35768 0.68 0.93186
Target:  5'- cGGCucgGGCCGAGAcaggaGGCcCGCGGGCg-- -3'
miRNA:   3'- aCUG---CCGGCUCU-----UCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 35813 0.71 0.807587
Target:  5'- aGGCGGCCgcgcagcggcagGAGGAGCGCugGcGCg-- -3'
miRNA:   3'- aCUGCCGG------------CUCUUCGUGugCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 36306 0.69 0.888133
Target:  5'- gUGGCGuucuaccGCCG-GggGCACGCGGcUUUCg -3'
miRNA:   3'- -ACUGC-------CGGCuCuuCGUGUGCUuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 36352 0.69 0.874326
Target:  5'- -cGCGGCUGGGcgcccuGCGCGCGGACg-- -3'
miRNA:   3'- acUGCCGGCUCuu----CGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 36385 0.73 0.678374
Target:  5'- aGGCGGCCGGcGGGCGCGCGGc---- -3'
miRNA:   3'- aCUGCCGGCUcUUCGUGUGCUugaag -5'
23576 3' -52.6 NC_005261.1 + 36432 0.69 0.904973
Target:  5'- gUGACGuacgugcgcagccccGCCGAGGcGGCACGCGcGCUg- -3'
miRNA:   3'- -ACUGC---------------CGGCUCU-UCGUGUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 36635 0.69 0.908784
Target:  5'- -aACGGCgCGAagccGGCGCGCGGGCUUg -3'
miRNA:   3'- acUGCCG-GCUcu--UCGUGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 36696 0.82 0.261018
Target:  5'- gUGGCGGCCGAGGcGGCGCGCGAccGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCU-UCGUGUGCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 36849 0.73 0.709599
Target:  5'- cUGGCGGCCGuggaGGAGGCGC-CgGAGCUg- -3'
miRNA:   3'- -ACUGCCGGC----UCUUCGUGuG-CUUGAag -5'
23576 3' -52.6 NC_005261.1 + 37155 0.71 0.802089
Target:  5'- aGGCGGCCGcgggcguggugcuggGGcuGCGCGCGGACg-- -3'
miRNA:   3'- aCUGCCGGC---------------UCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 37239 0.66 0.974897
Target:  5'- -cGCGGCUGGcGGAGCGCgGCGAcgcGCUg- -3'
miRNA:   3'- acUGCCGGCU-CUUCGUG-UGCU---UGAag -5'
23576 3' -52.6 NC_005261.1 + 37351 0.69 0.902382
Target:  5'- -cGCGuaCGAGggGCuGCGCGcGCUUCu -3'
miRNA:   3'- acUGCcgGCUCuuCG-UGUGCuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 37416 0.67 0.955006
Target:  5'- gGGCGGCgcAGgcGCACGCGccCUUCc -3'
miRNA:   3'- aCUGCCGgcUCuuCGUGUGCuuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 37549 0.66 0.974897
Target:  5'- -cGCGGCCGcGGugcacucGCGCGCGAACc-- -3'
miRNA:   3'- acUGCCGGCuCUu------CGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 38148 0.7 0.866721
Target:  5'- cGGCGGCggCGAGggGCGCGgcgcgccccCGGGCggCg -3'
miRNA:   3'- aCUGCCG--GCUCuuCGUGU---------GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 38278 0.67 0.958895
Target:  5'- gGGCGGCUGGu--GCACGCGGuGCUg- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 38320 0.67 0.958895
Target:  5'- --cUGGCCGAGgcGCuCGCGGGCc-- -3'
miRNA:   3'- acuGCCGGCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 38372 0.75 0.583499
Target:  5'- gGGCGGCCGGGAAGCgGCACcucguGCUg- -3'
miRNA:   3'- aCUGCCGGCUCUUCG-UGUGcu---UGAag -5'
23576 3' -52.6 NC_005261.1 + 38939 0.8 0.331804
Target:  5'- cGGCGGCCGGGcgggccgcGGCGCGCGGGCUg- -3'
miRNA:   3'- aCUGCCGGCUCu-------UCGUGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 39376 0.71 0.792796
Target:  5'- cGGCGGCCGGGGAGgGCGgcccuggcggcgaccCGAGCc-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGU---------------GCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.