miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 39586 0.66 0.969161
Target:  5'- gGGgGGCCGAGGAGUGgCugGAcgACg-- -3'
miRNA:   3'- aCUgCCGGCUCUUCGU-GugCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 39784 0.66 0.962547
Target:  5'- gGACGucGCCGGGggGCgGCGCGGcCg-- -3'
miRNA:   3'- aCUGC--CGGCUCuuCG-UGUGCUuGaag -5'
23576 3' -52.6 NC_005261.1 + 40951 0.68 0.93186
Target:  5'- cGugGGCgGAcguaGGGCGCugGAACUc- -3'
miRNA:   3'- aCugCCGgCUc---UUCGUGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 42673 0.66 0.969161
Target:  5'- cGGCGGCCGGGccGC-CGCcGGCa-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGuGUGcUUGaag -5'
23576 3' -52.6 NC_005261.1 + 42855 0.72 0.740192
Target:  5'- cGGCGcGCCGGGggGC-CGCGAGa--- -3'
miRNA:   3'- aCUGC-CGGCUCuuCGuGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 43777 0.67 0.941871
Target:  5'- cGAC-GCgGAGggGgACGCGGACg-- -3'
miRNA:   3'- aCUGcCGgCUCuuCgUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 44030 0.66 0.974897
Target:  5'- gGGCGGCCGccgcgcGGcGGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGC------UCuUCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 44174 0.67 0.950448
Target:  5'- cGACcuGGCCGAcAAGCuccgcgccagcgaGCGCGAGCUg- -3'
miRNA:   3'- aCUG--CCGGCUcUUCG-------------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 44215 0.77 0.471918
Target:  5'- aGGCGGCCcGGGAGCGCGCGcuGCUg- -3'
miRNA:   3'- aCUGCCGGcUCUUCGUGUGCu-UGAag -5'
23576 3' -52.6 NC_005261.1 + 44279 0.73 0.687792
Target:  5'- cGACGGCCGAccgcccgGAGGCGgcgccCGCGGACggCg -3'
miRNA:   3'- aCUGCCGGCU-------CUUCGU-----GUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 44412 0.71 0.82546
Target:  5'- cGGCGGCUGcGGcgguggcggcGGCGCGCGGGCggCg -3'
miRNA:   3'- aCUGCCGGCuCU----------UCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 44640 0.68 0.936992
Target:  5'- cGACGG-CGAGGucgccgAGCGCGCGAucGCgUCc -3'
miRNA:   3'- aCUGCCgGCUCU------UCGUGUGCU--UGaAG- -5'
23576 3' -52.6 NC_005261.1 + 44894 0.81 0.309179
Target:  5'- gGAUGGCCGGGgcGUACACGGACc-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 45197 0.68 0.936992
Target:  5'- cGAgGGCCGcGu-GUGCGCGGGCUUg -3'
miRNA:   3'- aCUgCCGGCuCuuCGUGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 45382 0.66 0.969161
Target:  5'- -uGCGGCCGGGcccGGGaGCugGAGCUg- -3'
miRNA:   3'- acUGCCGGCUC---UUCgUGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 46752 0.67 0.950448
Target:  5'- cGGCGGCCGcggcggcgccgcuGGGAG-GCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGC-------------UCUUCgUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 46875 0.69 0.874326
Target:  5'- aGAaGGCCGAGAAGU---CGAACUUg -3'
miRNA:   3'- aCUgCCGGCUCUUCGuguGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 47100 0.69 0.888836
Target:  5'- -cACGGCUGAGGccucggccgcGGCGCGCGAGaCggcgUCg -3'
miRNA:   3'- acUGCCGGCUCU----------UCGUGUGCUU-Ga---AG- -5'
23576 3' -52.6 NC_005261.1 + 47314 0.68 0.926473
Target:  5'- aUGGCGGCCaccgggGAGAAgGCGCGCGcg--UCg -3'
miRNA:   3'- -ACUGCCGG------CUCUU-CGUGUGCuugaAG- -5'
23576 3' -52.6 NC_005261.1 + 47699 0.74 0.636216
Target:  5'- cGGCGGCgGGGAugcGCGCGCGGAUg-- -3'
miRNA:   3'- aCUGCCGgCUCUu--CGUGUGCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.