miRNA display CGI


Results 141 - 160 of 352 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 48028 0.71 0.816613
Target:  5'- aGAgcaGGgCGAGGAGCACGCGcGCgcggUCg -3'
miRNA:   3'- aCUg--CCgGCUCUUCGUGUGCuUGa---AG- -5'
23576 3' -52.6 NC_005261.1 + 48347 0.67 0.955006
Target:  5'- cGGCgaGGCCGAGGAGCcgGCuccACUUCg -3'
miRNA:   3'- aCUG--CCGGCUCUUCGugUGcu-UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 48661 0.67 0.960384
Target:  5'- aGACGGCCGugagcuucuccaAGAGGUACgcccagucgaaguugACGAugUUg -3'
miRNA:   3'- aCUGCCGGC------------UCUUCGUG---------------UGCUugAAg -5'
23576 3' -52.6 NC_005261.1 + 49461 0.67 0.958895
Target:  5'- cGGCcagGGCCGAGGAGCGCAgCGc----- -3'
miRNA:   3'- aCUG---CCGGCUCUUCGUGU-GCuugaag -5'
23576 3' -52.6 NC_005261.1 + 49753 0.67 0.946498
Target:  5'- cGACGGUgaugaccgucgUGuAGAucAGCACGCGGACgUCg -3'
miRNA:   3'- aCUGCCG-----------GC-UCU--UCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 50452 0.67 0.952557
Target:  5'- cGGCGGCCaaGAcGGugacccucgcgccagGGCcCGCGGGCUUCg -3'
miRNA:   3'- aCUGCCGG--CU-CU---------------UCGuGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 50640 0.72 0.779528
Target:  5'- gGGCGGCgGGGuGGCGCcgGCGAACg-- -3'
miRNA:   3'- aCUGCCGgCUCuUCGUG--UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 50851 0.71 0.807587
Target:  5'- cGACGGCCGAGGAcaucuGCcGCGCGGugggcGCUa- -3'
miRNA:   3'- aCUGCCGGCUCUU-----CG-UGUGCU-----UGAag -5'
23576 3' -52.6 NC_005261.1 + 50954 0.67 0.955006
Target:  5'- -cGCGGCCGuGGucgacuacGGCGCGCGAAaccUCu -3'
miRNA:   3'- acUGCCGGCuCU--------UCGUGUGCUUga-AG- -5'
23576 3' -52.6 NC_005261.1 + 51487 0.67 0.950875
Target:  5'- cGACuGGCCGAuGAugcagGGCGCgGCGGACg-- -3'
miRNA:   3'- aCUG-CCGGCU-CU-----UCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 52318 0.67 0.956591
Target:  5'- aGcACGGUCGAGcAGGCcaccgaggcguucguGCGCGGGCUggUCg -3'
miRNA:   3'- aC-UGCCGGCUC-UUCG---------------UGUGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 53048 0.66 0.965967
Target:  5'- cGGC-GCCGuGAAGCGCuucuCGGACg-- -3'
miRNA:   3'- aCUGcCGGCuCUUCGUGu---GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 53287 0.69 0.895732
Target:  5'- cGGCGGCCGccgaGGAGGUgcuGCGCGAGg--- -3'
miRNA:   3'- aCUGCCGGC----UCUUCG---UGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 53822 0.69 0.895732
Target:  5'- -cGCGGCCGAcauGCuGCGCGAGCUg- -3'
miRNA:   3'- acUGCCGGCUcuuCG-UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 53857 0.79 0.380621
Target:  5'- cGGCGGCCGAGGccgAGCcCGCGGGCggCg -3'
miRNA:   3'- aCUGCCGGCUCU---UCGuGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 54655 0.72 0.779528
Target:  5'- cUGGCGGCCGcGGgcGC-CGCGGGCa-- -3'
miRNA:   3'- -ACUGCCGGC-UCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 55138 0.69 0.881699
Target:  5'- cGGCGGCgCuGGAGGCGCugGAAg--- -3'
miRNA:   3'- aCUGCCG-GcUCUUCGUGugCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 55435 0.69 0.908784
Target:  5'- aGGUGGCCGcggcGGAGCugGCGcuCUUCg -3'
miRNA:   3'- aCUGCCGGCu---CUUCGugUGCuuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 55790 0.7 0.858891
Target:  5'- cGGCGGCgCGGGGccGGCcggggGCGCGGACggCg -3'
miRNA:   3'- aCUGCCG-GCUCU--UCG-----UGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 56348 0.67 0.954199
Target:  5'- cUGGCGGCCGcaGGggGCGgguggguggugaGCG-ACUUCc -3'
miRNA:   3'- -ACUGCCGGC--UCuuCGUg-----------UGCuUGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.