miRNA display CGI


Results 81 - 100 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 101532 0.67 0.950875
Target:  5'- cGGCGGUcagcgCGGGggGC-CGagGGACUUCa -3'
miRNA:   3'- aCUGCCG-----GCUCuuCGuGUg-CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 100865 0.69 0.874326
Target:  5'- cGAaGGCCGccAGAAGCGCGCGcAGCcccUCg -3'
miRNA:   3'- aCUgCCGGC--UCUUCGUGUGC-UUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 100684 0.79 0.380621
Target:  5'- gUGGCGGCggCGGGAgcGGCGCGCGGACcUCg -3'
miRNA:   3'- -ACUGCCG--GCUCU--UCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 100269 0.68 0.920831
Target:  5'- cGGCGcGCCGGu-GGCGCACGAAg--- -3'
miRNA:   3'- aCUGC-CGGCUcuUCGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 99306 0.66 0.969161
Target:  5'- cGGCcGCCGGcuuGGCGCGCGGGCcgCg -3'
miRNA:   3'- aCUGcCGGCUcu-UCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 98809 0.66 0.974897
Target:  5'- gGACGcGCCGGGGgacgggguGGCcGCugGGGCUcgggUCg -3'
miRNA:   3'- aCUGC-CGGCUCU--------UCG-UGugCUUGA----AG- -5'
23576 3' -52.6 NC_005261.1 + 98701 0.8 0.347552
Target:  5'- cUGGCGGCCGcguAGAGGCGCGCGGcccgggccuCUUCg -3'
miRNA:   3'- -ACUGCCGGC---UCUUCGUGUGCUu--------GAAG- -5'
23576 3' -52.6 NC_005261.1 + 98631 0.67 0.955006
Target:  5'- gGGCGGC--GGggGCGCGCGGcGCUc- -3'
miRNA:   3'- aCUGCCGgcUCuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 98141 0.68 0.914934
Target:  5'- cGGCGGCCGucGGcGGCAaggcCGCGGGCggCg -3'
miRNA:   3'- aCUGCCGGC--UCuUCGU----GUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 98047 0.68 0.936992
Target:  5'- cUGGCGGCCGcGGgcGGCGggacCGCGGGCggCg -3'
miRNA:   3'- -ACUGCCGGCuCU--UCGU----GUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 98004 0.69 0.881699
Target:  5'- aGGCGGCgGGGgcGCugGCGGcgagGCUg- -3'
miRNA:   3'- aCUGCCGgCUCuuCGugUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 97420 0.68 0.914934
Target:  5'- gGGCGcGCCGGGccugcccuuGGGCGCGggucUGGGCUUCg -3'
miRNA:   3'- aCUGC-CGGCUC---------UUCGUGU----GCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 97198 0.67 0.958895
Target:  5'- -cGCGGCCG-GAAGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 97120 0.66 0.969161
Target:  5'- -cGCGGCCG-GAGGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 97095 0.67 0.945136
Target:  5'- cGGCGGCUGgcgcgcgccacgcaGGAAGCGCuCGGGCc-- -3'
miRNA:   3'- aCUGCCGGC--------------UCUUCGUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 95604 0.73 0.718856
Target:  5'- cGGCGGCCGAGuccccGCuggacuuugcgccGCGCGAGCUg- -3'
miRNA:   3'- aCUGCCGGCUCuu---CG-------------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 95323 0.67 0.958895
Target:  5'- cGGCGGCCccGGAGCGCcCGggUc-- -3'
miRNA:   3'- aCUGCCGGcuCUUCGUGuGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 95292 0.68 0.914934
Target:  5'- cUGAUGGCCagcuGGgcGCAgACGGACUg- -3'
miRNA:   3'- -ACUGCCGGc---UCuuCGUgUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 94276 0.7 0.866721
Target:  5'- cGGCGGCCGuGucguccagguacGAGCGCACGGuCUcCg -3'
miRNA:   3'- aCUGCCGGCuC------------UUCGUGUGCUuGAaG- -5'
23576 3' -52.6 NC_005261.1 + 93494 0.66 0.974897
Target:  5'- -cGCGGC---GAAGCGCGCGAACcgCg -3'
miRNA:   3'- acUGCCGgcuCUUCGUGUGCUUGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.