miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 91550 0.82 0.274122
Target:  5'- gUGGCGGCCGccguGGAGCGCGCGGccaacgcgcggaACUUCg -3'
miRNA:   3'- -ACUGCCGGCu---CUUCGUGUGCU------------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 91264 0.66 0.972135
Target:  5'- gGGCGGCgGcAGcGGCgacgGCGCGGACUg- -3'
miRNA:   3'- aCUGCCGgC-UCuUCG----UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 91024 0.71 0.807587
Target:  5'- cGGCGG-CGAGGAGCGCGacuacuGCUUCc -3'
miRNA:   3'- aCUGCCgGCUCUUCGUGUgcu---UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 90728 0.66 0.969161
Target:  5'- cGACcgcugGGCCGcgccuGAGGCGCugGcgcggGACUUCc -3'
miRNA:   3'- aCUG-----CCGGCu----CUUCGUGugC-----UUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 89607 0.67 0.950875
Target:  5'- cGACGGCuaCGGGAAGCugaacCGCGGcggcguCUUCc -3'
miRNA:   3'- aCUGCCG--GCUCUUCGu----GUGCUu-----GAAG- -5'
23576 3' -52.6 NC_005261.1 + 88999 0.69 0.895732
Target:  5'- cGGCGGCCGAccuGCGCGCGcugGGCg-- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGC---UUGaag -5'
23576 3' -52.6 NC_005261.1 + 88925 0.66 0.974897
Target:  5'- cGAgGGCUGcGcGGCGCucaccgccGCGGGCUUCu -3'
miRNA:   3'- aCUgCCGGCuCuUCGUG--------UGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 88548 0.66 0.972135
Target:  5'- aGACGaCCGAGuacccGAGCGCcgGCGAcgcgucccGCUUCg -3'
miRNA:   3'- aCUGCcGGCUC-----UUCGUG--UGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 88405 0.79 0.380621
Target:  5'- cGACGG-CGAGGAGCACGacaucuUGGACUUCg -3'
miRNA:   3'- aCUGCCgGCUCUUCGUGU------GCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 87290 0.66 0.965967
Target:  5'- -cACGGCCGcguAGAAGCAgGgGAGCc-- -3'
miRNA:   3'- acUGCCGGC---UCUUCGUgUgCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 87256 0.68 0.914934
Target:  5'- cGuCGGCCGAGAGGUuuCGCGcGCcguagUCg -3'
miRNA:   3'- aCuGCCGGCUCUUCGu-GUGCuUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 87125 0.68 0.93186
Target:  5'- aGAagGGCCGc-GGGUACGCGAGCUgcUCg -3'
miRNA:   3'- aCUg-CCGGCucUUCGUGUGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 86945 0.66 0.969161
Target:  5'- cGGCGGgcuggucaaagaCCGuGAAGCACACGuccgGCggCa -3'
miRNA:   3'- aCUGCC------------GGCuCUUCGUGUGCu---UGaaG- -5'
23576 3' -52.6 NC_005261.1 + 86804 0.68 0.92592
Target:  5'- cGGCGcGcCCGGGGcccagcaggggugGGCGCGCGGGCUcCg -3'
miRNA:   3'- aCUGC-C-GGCUCU-------------UCGUGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 85940 0.66 0.974897
Target:  5'- aUGGCGGCCaGGgcGC-CGCGGaaGCUg- -3'
miRNA:   3'- -ACUGCCGGcUCuuCGuGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 85665 0.66 0.965967
Target:  5'- cGACGG-CGAGcucGCGCGCGAgucGCUa- -3'
miRNA:   3'- aCUGCCgGCUCuu-CGUGUGCU---UGAag -5'
23576 3' -52.6 NC_005261.1 + 85449 0.67 0.955006
Target:  5'- uUGGCGccgcccGCCGAGAAcauCACGCGGuuCUUCa -3'
miRNA:   3'- -ACUGC------CGGCUCUUc--GUGUGCUu-GAAG- -5'
23576 3' -52.6 NC_005261.1 + 85197 0.75 0.604529
Target:  5'- cGACGGCUGccccggcgccgcGGAAGCGCugGCGAGCUg- -3'
miRNA:   3'- aCUGCCGGC------------UCUUCGUG--UGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 85086 0.68 0.93186
Target:  5'- cGGCGGCgCGAcGgcGCGCGCGuACg-- -3'
miRNA:   3'- aCUGCCG-GCU-CuuCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 85008 0.73 0.730082
Target:  5'- aUGACGGCCGcGggGuCGCGCGGccGCcgCg -3'
miRNA:   3'- -ACUGCCGGCuCuuC-GUGUGCU--UGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.