miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 84955 0.66 0.969161
Target:  5'- cGGCGGCCGccGAGGCgu-CGGGCgcgUCc -3'
miRNA:   3'- aCUGCCGGCu-CUUCGuguGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 84878 0.7 0.833262
Target:  5'- cGGCGGCCGA-AAGCGCggcggggGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUcUUCGUG-------UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 84817 0.73 0.730082
Target:  5'- gGACGGCgGGGGGccGCAgACGAGCUc- -3'
miRNA:   3'- aCUGCCGgCUCUU--CGUgUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 83765 0.7 0.850843
Target:  5'- -cACGGCCGGGucgcAGCGCcCGAGCa-- -3'
miRNA:   3'- acUGCCGGCUCu---UCGUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 83400 0.71 0.82546
Target:  5'- --uCGGCCGAGGcgagcaGGUGCGCGAaguugagcuGCUUCa -3'
miRNA:   3'- acuGCCGGCUCU------UCGUGUGCU---------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 83174 0.67 0.958895
Target:  5'- cGGCGGCCGAGcucgccGGCccCGCGcAGCUg- -3'
miRNA:   3'- aCUGCCGGCUCu-----UCGu-GUGC-UUGAag -5'
23576 3' -52.6 NC_005261.1 + 82993 0.67 0.955006
Target:  5'- aGGCGGCCGccucGCGCACcGAGCcgccgUCg -3'
miRNA:   3'- aCUGCCGGCucuuCGUGUG-CUUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 82620 0.69 0.874326
Target:  5'- gGACGcGCUgcuggaccagGAGGAGCGCAUGGGCg-- -3'
miRNA:   3'- aCUGC-CGG----------CUCUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 82318 0.71 0.82546
Target:  5'- cGGCGGCUGcggcuggaAGAAGCACaccggagggagGCGAuCUUCa -3'
miRNA:   3'- aCUGCCGGC--------UCUUCGUG-----------UGCUuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 80059 0.66 0.965636
Target:  5'- cUGGCGGCgggcgCGGGggGCgugggggACGCGGACc-- -3'
miRNA:   3'- -ACUGCCG-----GCUCuuCG-------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 79115 0.7 0.850843
Target:  5'- cGGUGGCCGGGGAGCuCGCGcGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUUCGuGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 79015 0.67 0.941871
Target:  5'- cGGCGGCacuaCGAGAcgGGCGa--GGGCUUCg -3'
miRNA:   3'- aCUGCCG----GCUCU--UCGUgugCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 78707 0.67 0.950875
Target:  5'- gUGGCGGCgGGGcugcuccaGGGCGCGCGuGCg-- -3'
miRNA:   3'- -ACUGCCGgCUC--------UUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 78026 0.74 0.646783
Target:  5'- -cGCGG-CGGGAGcgcGCGCGCGGACUUCu -3'
miRNA:   3'- acUGCCgGCUCUU---CGUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 77705 0.69 0.888836
Target:  5'- gGACGGCCucGggGCGgAUGAAgUUg -3'
miRNA:   3'- aCUGCCGGcuCuuCGUgUGCUUgAAg -5'
23576 3' -52.6 NC_005261.1 + 77656 0.68 0.914934
Target:  5'- cGACGGCCGgcgccugcAGgcGCaggGCGCGGACg-- -3'
miRNA:   3'- aCUGCCGGC--------UCuuCG---UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 77144 0.7 0.866721
Target:  5'- cGGCGGCCGAGcuGCcCGUGAGCg-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 76636 0.68 0.920831
Target:  5'- gGugGG-CGGGAGGCugccCACGAACa-- -3'
miRNA:   3'- aCugCCgGCUCUUCGu---GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 76519 0.69 0.908784
Target:  5'- gGAUGG--GGGggGCACACGGGCg-- -3'
miRNA:   3'- aCUGCCggCUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 75851 0.67 0.946498
Target:  5'- cGACGgugccgcuGCCGc-AGGCGCGCGAGCUg- -3'
miRNA:   3'- aCUGC--------CGGCucUUCGUGUGCUUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.