Results 81 - 100 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 3' | -52.6 | NC_005261.1 | + | 8357 | 0.71 | 0.806675 |
Target: 5'- aUGGCGGCCGAGAgcaacaucgugauGGCcgacgucgcgguGCugGAGCg-- -3' miRNA: 3'- -ACUGCCGGCUCU-------------UCG------------UGugCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 35813 | 0.71 | 0.807587 |
Target: 5'- aGGCGGCCgcgcagcggcagGAGGAGCGCugGcGCg-- -3' miRNA: 3'- aCUGCCGG------------CUCUUCGUGugCuUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 25064 | 0.71 | 0.807587 |
Target: 5'- aUGACGGCC-AGGAGCAgGCGcuCggCg -3' miRNA: 3'- -ACUGCCGGcUCUUCGUgUGCuuGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 26678 | 0.71 | 0.807587 |
Target: 5'- cGuCGGCCGGGcAGGCgguccGCAUGAACgcgUCg -3' miRNA: 3'- aCuGCCGGCUC-UUCG-----UGUGCUUGa--AG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 50851 | 0.71 | 0.807587 |
Target: 5'- cGACGGCCGAGGAcaucuGCcGCGCGGugggcGCUa- -3' miRNA: 3'- aCUGCCGGCUCUU-----CG-UGUGCU-----UGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 91024 | 0.71 | 0.807587 |
Target: 5'- cGGCGG-CGAGGAGCGCGacuacuGCUUCc -3' miRNA: 3'- aCUGCCgGCUCUUCGUGUgcu---UGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 30834 | 0.71 | 0.816613 |
Target: 5'- cUGGCGGCCGGGcucuGGCcguucguggACGCGGGCg-- -3' miRNA: 3'- -ACUGCCGGCUCu---UCG---------UGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 54655 | 0.72 | 0.779528 |
Target: 5'- cUGGCGGCCGcGGgcGC-CGCGGGCa-- -3' miRNA: 3'- -ACUGCCGGC-UCuuCGuGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 122489 | 0.72 | 0.769881 |
Target: 5'- aGGCGGUCGGccuGCGCGCGGACg-- -3' miRNA: 3'- aCUGCCGGCUcuuCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 107930 | 0.72 | 0.769881 |
Target: 5'- cGGCGGgCUGAaGAGCGCGCGGGCc-- -3' miRNA: 3'- aCUGCC-GGCUcUUCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 95604 | 0.73 | 0.718856 |
Target: 5'- cGGCGGCCGAGuccccGCuggacuuugcgccGCGCGAGCUg- -3' miRNA: 3'- aCUGCCGGCUCuu---CG-------------UGUGCUUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 133937 | 0.73 | 0.719881 |
Target: 5'- cGGCGGCCGcGggGCcCGCGgccGugUUCg -3' miRNA: 3'- aCUGCCGGCuCuuCGuGUGC---UugAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 27728 | 0.73 | 0.719881 |
Target: 5'- cGACGGCCGuGAcGCugGCcAGCUUg -3' miRNA: 3'- aCUGCCGGCuCUuCGugUGcUUGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 84817 | 0.73 | 0.730082 |
Target: 5'- gGACGGCgGGGGGccGCAgACGAGCUc- -3' miRNA: 3'- aCUGCCGgCUCUU--CGUgUGCUUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 42855 | 0.72 | 0.740192 |
Target: 5'- cGGCGcGCCGGGggGC-CGCGAGa--- -3' miRNA: 3'- aCUGC-CGGCUCuuCGuGUGCUUgaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 56971 | 0.72 | 0.760102 |
Target: 5'- aGGCGGCCGGGGAGaACuCGcGCUUUu -3' miRNA: 3'- aCUGCCGGCUCUUCgUGuGCuUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 133078 | 0.72 | 0.760102 |
Target: 5'- cGACGcggcccGCCGGgccGAGGCGCGCGAGCg-- -3' miRNA: 3'- aCUGC------CGGCU---CUUCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 18370 | 0.72 | 0.769881 |
Target: 5'- cGGCGGUCaGGGAGCGCACGG---UCa -3' miRNA: 3'- aCUGCCGGcUCUUCGUGUGCUugaAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 105046 | 0.72 | 0.769881 |
Target: 5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3' miRNA: 3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 67094 | 0.71 | 0.824584 |
Target: 5'- gGGCGGCgcuUGAGAgcgucguGGCGCGCGGGCg-- -3' miRNA: 3'- aCUGCCG---GCUCU-------UCGUGUGCUUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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