Results 101 - 120 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 3' | -52.6 | NC_005261.1 | + | 2490 | 0.7 | 0.842583 |
Target: 5'- -cGCGGCUGAGGcgcgccAGCAuCACGAACa-- -3' miRNA: 3'- acUGCCGGCUCU------UCGU-GUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 134711 | 0.7 | 0.842583 |
Target: 5'- aGGCGGCCGcc--GCGCugGAGCg-- -3' miRNA: 3'- aCUGCCGGCucuuCGUGugCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 24975 | 0.7 | 0.842583 |
Target: 5'- cGaACGGCaUGAGcccGCGCGCGAACUUg -3' miRNA: 3'- aC-UGCCG-GCUCuu-CGUGUGCUUGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 13963 | 0.7 | 0.850843 |
Target: 5'- -cGCGGCCG---GGCGCGCGGGCggCg -3' miRNA: 3'- acUGCCGGCucuUCGUGUGCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 79115 | 0.7 | 0.850843 |
Target: 5'- cGGUGGCCGGGGAGCuCGCGcGCg-- -3' miRNA: 3'- aCUGCCGGCUCUUCGuGUGCuUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 26678 | 0.71 | 0.807587 |
Target: 5'- cGuCGGCCGGGcAGGCgguccGCAUGAACgcgUCg -3' miRNA: 3'- aCuGCCGGCUC-UUCG-----UGUGCUUGa--AG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 25064 | 0.71 | 0.807587 |
Target: 5'- aUGACGGCC-AGGAGCAgGCGcuCggCg -3' miRNA: 3'- -ACUGCCGGcUCUUCGUgUGCuuGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 42855 | 0.72 | 0.740192 |
Target: 5'- cGGCGcGCCGGGggGC-CGCGAGa--- -3' miRNA: 3'- aCUGC-CGGCUCuuCGuGUGCUUgaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 56971 | 0.72 | 0.760102 |
Target: 5'- aGGCGGCCGGGGAGaACuCGcGCUUUu -3' miRNA: 3'- aCUGCCGGCUCUUCgUGuGCuUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 133078 | 0.72 | 0.760102 |
Target: 5'- cGACGcggcccGCCGGgccGAGGCGCGCGAGCg-- -3' miRNA: 3'- aCUGC------CGGCU---CUUCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 18370 | 0.72 | 0.769881 |
Target: 5'- cGGCGGUCaGGGAGCGCACGG---UCa -3' miRNA: 3'- aCUGCCGGcUCUUCGUGUGCUugaAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 105046 | 0.72 | 0.769881 |
Target: 5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3' miRNA: 3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 107930 | 0.72 | 0.769881 |
Target: 5'- cGGCGGgCUGAaGAGCGCGCGGGCc-- -3' miRNA: 3'- aCUGCC-GGCUcUUCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 122489 | 0.72 | 0.769881 |
Target: 5'- aGGCGGUCGGccuGCGCGCGGACg-- -3' miRNA: 3'- aCUGCCGGCUcuuCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 54655 | 0.72 | 0.779528 |
Target: 5'- cUGGCGGCCGcGGgcGC-CGCGGGCa-- -3' miRNA: 3'- -ACUGCCGGC-UCuuCGuGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 5844 | 0.71 | 0.798391 |
Target: 5'- cGGCGGCCucgGGGAacAGCGcCGCGAGCg-- -3' miRNA: 3'- aCUGCCGG---CUCU--UCGU-GUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 8949 | 0.71 | 0.798391 |
Target: 5'- gGGCGGgCGGGGcGGCGCGgGGGCUUg -3' miRNA: 3'- aCUGCCgGCUCU-UCGUGUgCUUGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 37155 | 0.71 | 0.802089 |
Target: 5'- aGGCGGCCGcgggcguggugcuggGGcuGCGCGCGGACg-- -3' miRNA: 3'- aCUGCCGGC---------------UCuuCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 8357 | 0.71 | 0.806675 |
Target: 5'- aUGGCGGCCGAGAgcaacaucgugauGGCcgacgucgcgguGCugGAGCg-- -3' miRNA: 3'- -ACUGCCGGCUCU-------------UCG------------UGugCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 35813 | 0.71 | 0.807587 |
Target: 5'- aGGCGGCCgcgcagcggcagGAGGAGCGCugGcGCg-- -3' miRNA: 3'- aCUGCCGG------------CUCUUCGUGugCuUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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